Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq72329 84.2 8e-12 seq4762 84.2 8e-12 >seq72329 Length=2074 Score = 84.2 bits (92), Expect = 8e-12 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| ||| | ||||||||| | ||| ||| || ||||| | || ||| || | ||| Sbjct 1041 ATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGACGGTGAGTTGTCG 982 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACAT-GTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| |||| ||||| |||| ||||| | ||| ||| || || || ||||||||||| Sbjct 981 TGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCT-GGGTGTGCCATTCAACATTGCCAG 923 Query 52229 CTA 52231 ||| Sbjct 922 CTA 920 >seq4762 Length=89736 Score = 84.2 bits (92), Expect = 8e-12 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| ||| | ||||||||| | ||| ||| || ||||| | || ||| || | ||| Sbjct 82916 ATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGACGGTGAGTTGTCG 82857 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACAT-GTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| |||| ||||| |||| ||||| | ||| ||| || || || ||||||||||| Sbjct 82856 TGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCT-GGGTGTGCCATTCAACATTGCCAG 82798 Query 52229 CTA 52231 ||| Sbjct 82797 CTA 82795 Score = 84.2 bits (92), Expect = 8e-12 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| ||| | ||||||||| | ||| ||| || ||||| | || ||| || | ||| Sbjct 87249 ATGGCATTGCCCCCCTGCCATGCGTTATGCCAGTTTTATGTGTCAGACGGTGAGTTGTCG 87190 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACAT-GTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| |||| ||||| |||| ||||| | ||| ||| || || || ||||||||||| Sbjct 87189 TGCCAGCTGTACCAGCGCTCTGGTGACATTGGTCT-GGGTGTGCCATTCAACATTGCCAG 87131 Query 52229 CTA 52231 ||| Sbjct 87130 CTA 87128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189931081858770