Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2134 125 2e-23 >seq2134 Length=159448 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 28727 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGT 28786 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 28787 GCGTCCATCTTCCAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 28846 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| ||||| || || |||||| |||| | | |||| ||| || ||||| Sbjct 28847 TTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCAAG 28906 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACCCT 152112 || || || ||||| || || |||||||| || | |||||| ||||| || Sbjct 28907 TGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCATCTTTACGCT 28957 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 26447 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGT 26506 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || || ||||| || | ||||||||| | | || || Sbjct 26507 GCGTCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGGTGGAATGCC 26566 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || ||||| |||| | | |||| ||| || ||||| Sbjct 26567 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAG 26626 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 26627 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 26903 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 26962 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 26963 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 27022 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 27023 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 27082 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 27083 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 27131 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 27190 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 27191 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 27250 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 27251 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 27310 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 27311 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 27359 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 27418 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 27419 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 27478 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 27479 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 27538 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 27539 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 27587 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 27646 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 27647 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 27706 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 27707 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 27766 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 27767 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 27815 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 27874 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 27875 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 27934 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 27935 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 27994 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 27995 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 28043 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 28102 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 28103 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 28162 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 28163 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 28222 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 28223 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 28271 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 28330 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 28331 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 28390 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 28391 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 28450 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 28451 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||| || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 28499 CCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 28558 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 28559 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 28618 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 28619 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 28678 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 28679 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || ||||| || ||||||||||| |||| | ||| | |||||| Sbjct 26229 AGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACCATCT 26288 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || |||||||| | | ||||||||| | | || |||||||| || Sbjct 26289 TCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 26348 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| || || |||||||| || || Sbjct 26349 TGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAGAGTGATGGTC 26408 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| |||||| Sbjct 26409 TTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 104 bits (114), Expect = 5e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || ||||| || || ||||| || ||||||||||| |||| | || Sbjct 26675 CCTGAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGTGT 26734 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || |||||||| || | ||||||||| | | || || Sbjct 26735 GCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 26794 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || || |||| | | |||| || || ||||| Sbjct 26795 TTCCTTGTCCTGGATCTTGGCCTTTACGTTCTCAATGGTGTCGCTTGGTTCCACCTCAAG 26854 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || | ||||| ||||||| |||||| Sbjct 26855 AGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152740774333247