Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2134 136 3e-27 seq23339 86.0 5e-12 >seq2134 Length=159448 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||| || || ||| |||||| ||||||||||| || Sbjct 26666 CATACCACCCCTGAGGCGCAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 26725 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 26726 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 26785 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 26786 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 26844 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 26845 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26896 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 26894 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 26953 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 26954 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 27013 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 27014 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 27072 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 27073 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27124 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 27122 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 27181 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 27182 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 27241 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 27242 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 27300 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 27301 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27352 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 27350 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 27409 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 27410 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 27469 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 27470 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 27528 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 27529 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27580 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 27578 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 27637 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 27638 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 27697 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 27698 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 27756 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 27757 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 27808 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 27806 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 27865 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 27866 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 27925 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 27926 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 27984 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 27985 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28036 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 28034 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 28093 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 28094 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 28153 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 28154 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 28212 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 28213 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28264 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 28262 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 28321 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 28322 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 28381 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 28382 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 28440 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 28441 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28492 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 28490 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 28549 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 28550 GGACAGTGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 28609 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| || | | |||| | ||||||||| | || Sbjct 28610 AGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTTGGTT 28668 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 28669 CCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 28720 Score = 127 bits (140), Expect = 1e-24 Identities = 172/236 (73%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 44104 TTTCATT-CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 ||| ||| ||||| | || | || || || || || ||| |||||| |||||||||| Sbjct 26206 TTTAATTGCCCCCACGAAGACGCAGAACAAGATGGAGGGTGGACTCCTTCTGGATGTTGT 26265 Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 | |||| || ||| | || |||| ||| || || || ||||||||||||||||| | Sbjct 26266 AGTCGGACAGAGTGCGACCATCTTCCAACTGTTTGCCAGCGAAGATCAAACGCTGCTGGT 26325 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | ||| | |||||||| ||| ||||| || | | |||| | ||||||||| Sbjct 26326 CAGGAGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTTACGTTCTCAATGGTGTCGCTT 26384 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 26385 GGTTCCACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26440 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 26438 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 26497 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||| ||| || || |||||||||| ||||||||| || | Sbjct 26498 GGACAGCGTGCGTCCATCTTCCAACTGTTTACCAGCAAAGATCAGACGCTGCTGGTCAGG 26557 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| || | | |||| | ||||||||| || | Sbjct 26558 TGGAATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTGGGCT 26616 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 26617 CAACCTCAAGAGTGATGGTCTTGCCAGTCAAGGTCTTTACGAAGATCTGCAT 26668 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | | |||||| || || ||| |||||| ||||||||||| || Sbjct 28718 CATACCACCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 28777 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || |||| ||| || || || ||||||| ||||||||| || | Sbjct 28778 GGACAGCGTGCGTCCATCTTCCAACTGTTTACCAGCGAAGATCAGACGCTGCTGGTCAGG 28837 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| || ||||| ||| | | | ||||||||| || || Sbjct 28838 AGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTC 28897 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || || |||||||| || || ||||| Sbjct 28898 AACCTCAAGTGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAAATCTGCAT 28948 >seq23339 Length=10106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| || | || ||||||||| | ||| ||| || || |||||||| |||| Sbjct 3424 CCTCCTCTGAGACGCAGCACCAGGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGAC 3365 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || |||||||| || || ||||||||||| | |||||| || | || Sbjct 3364 AGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGA 3305 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCG 44278 | ||||| || ||| ||||| ||| | | ||| | ||||||||| Sbjct 3304 ATGCCTTCTTTGTCCTGGATCTT-TGCCTTGACATTCTCAATGGTGTCG 3257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359669870960169