Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq25754 150 3e-31 seq47116 111 2e-19 seq11587 91.5 2e-13 >seq25754 Length=59922 Score = 150 bits (166), Expect = 3e-31 Identities = 184/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||| |||||| || | |||||| ||||| ||||||| ||| |||||||| || Sbjct 58721 CCAATAAGGATGAGCCGTGCGGTCTGAAACAGCCTCTCGTCATCCCAGTCTGGATGCTCC 58780 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 || || || ||||| ||||| | ||||||||| | |||||||| ||||| ||||||||| Sbjct 58781 TGCTTTAGTACATCACACACTCGGTTGTGTTCACGTAGCCAGATGGTGGCATACATCATG 58840 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACT 9414 || ||||| ||||| ||||| ||||| ||||| || || | ||| | ||||| | Sbjct 58841 AGTCCAGGAACCAGTCCAAAGGCCTCGTGACCCACGGCAAAACGTCGGGACTCGGGTATA 58900 Query 9415 TCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCG 9474 | ||||| ||| ||||| || || || || |||| | || || || | ||||| Sbjct 58901 TGAGGAGGGTAGTGCATGTCTACTTGAACCTCACTGACTGTCGGAGGGTAAACCTCACCA 58960 Query 9475 TCAATCATCTG 9485 || | ||||| Sbjct 58961 TCCAGAATCTG 58971 Score = 140 bits (154), Expect = 5e-28 Identities = 197/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8308 CCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCC 8367 ||| ||||| || | || || | | ||| | || || | |||| ||| | || || Sbjct 57536 CCCTTTGACATTATTGCAAACCAAATTCTGCAGAGAGGCAGTGTTGATAATCTCAAAACC 57595 Query 8368 CACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCAT 8427 ||| | || || || ||||| || ||||||||| | ||||| || ||| || |||| Sbjct 57596 CACTTTGCCACCAAATGTGCTTGGTTTCCAGTACTCAGGGGAACAAATGGGATTTCCCAT 57655 Query 8428 GAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTT 8487 || |||||||||||| | || || |||| ||| | ||| |||| || |||||||| || Sbjct 57656 AAGTCCTTTGAGGGAGTAGGGGGCACCCATCTCCACCATGGTCTCTCCAAAGATGGCATT 57715 Query 8488 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 | | | ||| || || |||| | || || || ||||||||||| || | ||||||||| Sbjct 57716 GAGCCTGGGTTTCTCAACCAGCAGACCAGTATAAAGCTCCACAGCATCTATGTCTCCGTA 57775 Query 8548 AAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 | | ||||| ||||| || |||||||||||| Sbjct 57776 CATCTCTTCAAGTTCAGCAGCCATTTCCTTTTCTCCT 57812 Score = 89.7 bits (98), Expect = 7e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| || || | || ||||| ||||| | | || ||||| || | | | | Sbjct 59725 TCACCTGCAACTCCCATTGGTGTTGGGCAATCATTCGCGACAGGAGGCAGTGTACGAGTG 59784 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || |||||||||||||| | |||||||||||| ||| | ||||| || ||| || | Sbjct 59785 TAGTAGGAGAGATTGGAATAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATGTA 59844 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAATAGAATGATAAAA 10084 || |||||||||||||||| | || ||| |||| | ||||| ||| ||||| Sbjct 59845 GGGGGGCTGTCAATCAAATGAGCTCGTGCTGGACCAGGAGGAAATAAAATTTTAAAA 59901 >seq47116 Length=3138 Score = 111 bits (122), Expect = 2e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || || || ||||||||| |||| || | || || || || | || ||||||||||| Sbjct 2504 CCACCAAATGTGCTGGGCATCCAATATTCAGGAGAACAAATAGCATTTCCCATGAGGCCT 2445 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8494 ||||| ||| | || || |||| ||| | ||| |||| || || | |||||||| | Sbjct 2444 TTGAGAGAGTAGGGGGCTCCCATCTCCACAATAGTCTCCCCAAATACAGCGTTGGGTCTA 2385 Query 8495 GGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGC 8553 || || |||| |||||| || | |||||||| || || || || | ||||| || Sbjct 2384 GGTTTCTCCA-CAAGAAGGCCAGGATACAGCTCAACCGCATCTACATGACCGTACAGCTT 2326 Query 8554 CCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGTTT 8588 | | |||||| | || | |||||| |||||||||| Sbjct 2325 CTTCAGTTCGTCTGCCAGCTCCTTGTCTCCTGTTT 2291 >seq11587 Length=30883 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 || |||||||| || | | ||||| |||| ||||| || | ||| ||||||||| Sbjct 15373 CCTATAATGATTAGCCTGGCAGTCTGAAACAACTGCTCATCCCCCCAGGTCGGATGTTCT 15314 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 | |||||| | ||| || || | |||||| || | ||||| | ||||||||||| || Sbjct 15313 TTTTTCAGGATATCACAAACGCGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTG 15254 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 || || || | ||| ||||| ||||||| || | |||| Sbjct 15253 AGACCCGGCAGCAGTCCAAACACCTCTTGTCCAATGGCCA 15214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716222139145280