Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pimephales_20promelas_20[genbank_20GCA_5F000700825.1_202014-06-10] 73,057 sequences; 1,219,326,373 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2134 131 4e-25 seq23339 116 9e-21 >seq2134 Length=159448 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || | || || || || ||||| || ||||| || || ||| Sbjct 26665 CAGATCTTCGTAAAGACCTTGACTGGCAAGACCATCACTCTTGAGGTTGA--GCCCAGCG 26608 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || || || ||||||| Sbjct 26607 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCTGACCAGC 26548 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| || || |||||| | ||||||||| | || || |||| || ||| Sbjct 26547 AGCGTCTGATCTTTGCTGGTAAACAGTTGGAAGATGGACGCACGCTGTCCGACTACAACA 26488 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| || Sbjct 26487 TCCAGAAGGAGTCCACCCTCCATCTGGT 26460 >seq23339 Length=10106 Score = 116 bits (128), Expect = 9e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| ||||| ||||| |||||| |||||||||||||| || || || |||||| Sbjct 3258 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 3317 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | ||||| || || |||||||| ||||||||| | || || |||| || ||| Sbjct 3318 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAAGATGGACGCACACTGTCCGACTACAAC 3377 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | || ||||| || || |||| || || || | |||||| Sbjct 3378 ATTCAGAAAGAGTCCACCTTGCACCTGGTGCTGCGTCTCAGA 3419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202604456062058