Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq292 141 8e-29 seq15 111 1e-19 >seq292 Length=796020 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || | ||| | |||||||| || | ||||||||||| || ||||| ||||||| Sbjct 171694 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 171635 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || | || |||||||||||||| ||| | || |||||||||||||| || Sbjct 171634 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 171575 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||| || || |||||| ||||| | | | ||||||| ||||||| Sbjct 171574 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 171515 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || | ||||| || || || ||||| Sbjct 171514 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 171467 Score = 132 bits (146), Expect = 4e-26 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | |||||||| || | ||||||||||| || ||||| ||||||| || Sbjct 171462 CCCCTC--AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACA 171405 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || ||||||||||| || ||| | || || ||||||||||| || | Sbjct 171404 GGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAA 171345 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| ||||| | | | || |||| ||||||| | Sbjct 171344 TGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCT 171285 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCT 21184 ||| |||||||||||| || || | ||||| || || || ||||| || || || Sbjct 171284 CCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTTTAAACT 171230 >seq15 Length=4650977 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||| || || || ||||| ||||| | |||||| || | || Sbjct 569627 GAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 569686 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| || || ||| | || || ||||||||||| ||| | ||| ||||| || Sbjct 569687 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 569746 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | | || |||| ||||||| || | ||| ||||| Sbjct 569747 CTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGT 569806 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAATCTC--TTATAAAT 21193 |||||||| | ||||| ||||| || ||||| ||| | | | |||||||| Sbjct 569807 TTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTGCACCACCTTTATAAAT 569859 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||||||||| || ||||| ||||| | |||||| || | || Sbjct 564361 GAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 564420 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| || || ||| | || || ||||||||||| ||| | ||| ||||| || Sbjct 564421 TTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 564480 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | | || || | |||||| |||| ||| ||||| Sbjct 564481 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGT 564540 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||||||| | || ||||| || || ||||| Sbjct 564541 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564573 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || || || || ||||| ||||| | |||||| || | ||||||||||| ||||| Sbjct 564149 GTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 564208 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || ||| || || Sbjct 564209 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 564268 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||| ||| ||||| ||| |||||||||||||| | || Sbjct 564269 ACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 564328 Query 21159 TTGACAAATATTTGCAT 21175 ||||| || || ||||| Sbjct 564329 TTGACGAAGATCTGCAT 564345 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || ||||| || || ||||| | |||||| || | || |||||||| || || Sbjct 564605 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 564664 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | ||| ||||| || ||| || ||| Sbjct 564665 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 564724 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | || || | ||||||| |||| ||| ||||| |||||||| | || Sbjct 564725 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 564784 Query 21159 TTGACAAATATTTGCATTTT 21178 |||||||| || ||||| || Sbjct 564785 TTGACAAAGATCTGCATGTT 564804 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| || | ||||| || || || ||||| ||||| | |||||| || | || Sbjct 569399 GAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 569458 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || || ||||||||||| ||| | ||| ||||| || Sbjct 569459 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATC 569518 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 ||| || || || | | | || |||| ||||||| || | ||| ||||| Sbjct 569519 CTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGT 569578 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || ||| | || || ||||| Sbjct 569579 TTTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 20994 ATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTC 21053 ||||| ||||| | |||||| || | || |||||||| ||||| ||| | || || ||| Sbjct 569202 ATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 569261 Query 21054 TGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTA 21113 |||||||| ||| | ||| ||||| || ||| || ||| || | | | || Sbjct 569262 TGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTG 569321 Query 21114 TCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGC 21173 |||| |||||| ||||| ||| || |||||||| || | || ||||| || || ||| Sbjct 569322 TCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGC 569381 Query 21174 AT 21175 || Sbjct 569382 AT 569383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422238692058260