Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq292 152 5e-32 seq15 149 6e-31 seq169 132 5e-26 seq22 96.9 4e-15 >seq292 Length=796020 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || || ||||||||| | || || || ||| Sbjct 171467 ATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 171526 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| ||| |||| || ||||| ||||| || | ||||| Sbjct 171527 GATACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCA 171585 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| || |||||||||||||| || | |||||||| |||||||| Sbjct 171586 GCAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAA 171645 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || ||| | ||| ||||||| || Sbjct 171646 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 171693 Score = 147 bits (162), Expect = 2e-30 Identities = 174/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| ||||| ||||| || || ||||| ||| | || || || | Sbjct 171235 AAAGATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAGCC 171294 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || |||| | | | |||| | |||| ||| |||| || ||||| ||||| || | | Sbjct 171295 CAGTGACACCATTGAGAACG-TGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTG 171353 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || || ||||||||||| || | |||||||| |||| Sbjct 171354 ACCAGCAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACT 171413 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| || || || ||| | ||| ||||||| ||| Sbjct 171414 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGGC 171466 >seq15 Length=4650977 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 564345 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGC 564286 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || |||||||||||| | ||||| Sbjct 564285 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 564227 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 564226 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 564167 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || | || || || || || | || ||||||| ||| Sbjct 564166 CATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGC 564118 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || ||| | Sbjct 564573 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 564514 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | || || |||||||||||| | ||||| Sbjct 564513 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 564455 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || |||||||| || | |||||||| |||||||| Sbjct 564454 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 564395 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || | || | ||||| ||| Sbjct 564394 CATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGGC 564346 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||| || || ||||| ||||||||||||||| | || | || ||| Sbjct 569611 ATGCAGATCTTCGGCAAGACCCTCACCGGCAAAACCATCACCCTTGAGGGGGAGCCCAGT 569552 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || |||||||||||| | ||||| Sbjct 569551 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 569493 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 569492 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 569433 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| || |||| || || || || | || | ||||| ||| Sbjct 569432 CATCCAGAAAGAATCCACACTCCACCTGGTCCTCCGTCTCAGGGGTGGC 569384 Score = 129 bits (142), Expect = 6e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||||||||||||| | || || || | Sbjct 564805 AAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCC 564746 Query 40746 CACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || ||||| | | | |||| |||| | ||||| | || || |||||||||||| | | Sbjct 564745 CAGCGACACCATTGAGAACG-TCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTG 564687 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | || |||| || || || |||||||| || | |||||||| |||| Sbjct 564686 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 564627 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| ||||| || || |||| || || || || | || ||||||| ||| Sbjct 564626 ACAATATCCAAAAAGAATCCACCCTCCACCTTGTCCTCCGTCTGAGGGGTGGC 564574 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| ||||| ||||||||||||||| | || || || || Sbjct 569842 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCC 569783 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || || |||||||||||| | ||| Sbjct 569782 AGTGACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGAC 569723 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || || || |||||||| || | |||||||| |||||| Sbjct 569722 CAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTAC 569663 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| || |||| || || || || | || | ||||| ||| Sbjct 569662 AACATCCAGAAAGAATCCACACTCCACCTGGTCCTCCGTCTCAGGGGTGGC 569612 Score = 109 bits (120), Expect = 6e-19 Identities = 136/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| || |||||| | || || || ||| Sbjct 569383 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTGGAAGTTGAGCCCAGT 569324 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||| | || || |||||||||||| | ||||| Sbjct 569323 GACACCATTGAGAACG-TCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCA 569265 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 569264 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 569205 Query 40869 CATC 40872 |||| Sbjct 569204 CATC 569201 >seq169 Length=1474717 Score = 132 bits (146), Expect = 5e-26 Identities = 104/122 (85%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||| ||| | ||| |||||||| | |||| ||| |||||||| | Sbjct 1314137 AGGTGGACCTGTCCAAAGACCTGCAGC-ACTGGGAGTCCCTGAAGGACGACGAGCGCTAC 1314195 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1314196 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 1314255 Query 116804 GT 116805 || Sbjct 1314256 GT 1314257 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||||||| ||||| ||||| ||||||| || || ||||||||||| || | Sbjct 1314726 TGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCT 1314785 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| ||||| || |||||||||||||||||| | | Sbjct 1314786 GGCTGAAGAAGAGAGGCCTGATGCCTGGCCTAACCTTCAGCAACGAGCTCATCAGTCGAG 1314845 Query 117162 ACGAGG 117167 |||||| Sbjct 1314846 ACGAGG 1314851 Score = 111 bits (122), Expect = 2e-19 Identities = 96/117 (82%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||||||||||||| | ||||| |||| ||||||||||| || Sbjct 1314337 GGTGGAGCGCTTCACGCAGGAGGTGCAGGTGACAGAGGCCAGGTGTTTCTACGGCTTCCA 1314396 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || ||||||||||| ||| Sbjct 1314397 GATCGCCATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTCATCGACACCTAC 1314451 >seq22 Length=4020106 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| || ||||| ||||| || || ||||| ||||||| || ||| ||||| Sbjct 3875833 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCT 3875892 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 || || | ||||| ||||| | ||||||||||| ||||| || | | |||||| ||| Sbjct 3875893 GCTATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTC 3875952 Query 117152 ATCTCCAGGGACGAGG 117167 || ||||||||||| Sbjct 3875953 ATTAGCAGGGACGAGG 3875968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515193535643600