Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq32 167 2e-36 seq15 120 3e-22 seq292 113 4e-20 >seq32 Length=3524602 Score = 167 bits (184), Expect = 2e-36 Identities = 468/706 (66%), Gaps = 22/706 (3%) Strand=Plus/Minus Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 ||| ||| |||| || ||||||||||| || ||||| || || | ||||||||||||| Sbjct 2635625 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATG 2635566 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 ||||| || || ||| || ||||||| ||| || || || || ||| Sbjct 2635565 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTC 2635506 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 ||||||||||| || || | | || | ||||| | | | || || | || Sbjct 2635505 CAGTCCCACAG---GTCGG-----TCGGCGTC-TTCTC--CCACAT-GTCGT---ACTGG 2635461 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 | || ||| | || || || | || ||| | || ||||| ||| | ||| Sbjct 2635460 AGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCTGCGGCG 2635401 Query 133515 AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGAC 133573 || |||||||| ||||||| ||||| ||| ||||| || ||| || || ||||| Sbjct 2635400 AGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGAT-GTTGAG 2635342 Query 133574 GAACCTGGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAAC 133632 | | ||| ||| ||| ||| | | ||||||| | || | || || ||||||| || Sbjct 2635341 CAGCTGGGCTTCGGGGCTTTCGAACG-GATGTCGCATCAGGATGAAGGCATCGGCCAGAC 2635283 Query 133633 CCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGG 133692 |||| | ||||| ||||| || | || || ||| | |||| | |||| | Sbjct 2635282 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCG 2635223 Query 133693 GATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTT 133752 | |||| |||| |||||||||||||||||| || ||||| | || || | Sbjct 2635222 GGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGG 2635163 Query 133753 TCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATAC 133812 |||| |||| || ||| || | ||| |||| || |||||| ||| || Sbjct 2635162 CCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGATGG 2635106 Query 133813 TGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGA 133872 ||| || || || |||||| ||||| || | | |||| || | ||| | ||||| Sbjct 2635105 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGA 2635046 Query 133873 GGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCT 133932 |||||||||||||||||||||||| || | || ||||| | |||||| |||| Sbjct 2635045 GGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCT 2634986 Query 133933 TGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGAT 133978 |||| |||||||| ||| ||||||||| | || ||||| ||| Sbjct 2634985 TGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGAT 2634940 >seq15 Length=4650977 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| ||| || ||||| || |||||||| || || ||||| ||| || Sbjct 569631 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 569690 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || ||||||||||| || Sbjct 569691 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 569750 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | || | |||||| || ||| ||||| | ||| | |||||| Sbjct 569751 ATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTG 569810 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| ||||| |||||||| Sbjct 569811 CCGGTGAGGGTTTTCACAAAGATCTGCAT 569839 Score = 113 bits (124), Expect = 4e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || |||||||| || ||||| || || ||||| ||| || ||||| Sbjct 564598 GTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 564657 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| || |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 564658 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 564717 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | || | |||||| || ||| ||||| | ||| | ||||||||||| Sbjct 564718 GGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGT 564777 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 564778 GAGGGTCTTGACAAAGATCTGCATG 564802 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| ||| || ||||| || |||||||| || || ||||| ||| || Sbjct 569403 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 569462 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || | |||||| || || || ||||||||||| || Sbjct 569463 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 569522 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | || | |||||| || ||| |||| | ||| | |||||| Sbjct 569523 ATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGTTTTG 569582 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || | || ||||||||| Sbjct 569583 CCGGTGAGGGTCTTGCCGAAGATCTGCATG 569612 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||| ||||| || |||||||| ||| || ||||| |||||| ||||| Sbjct 564142 GTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTG 564201 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 564202 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTT 564261 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| || || || || | ||| | || |||||||| Sbjct 564262 GGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGT 564321 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 564322 GAGGGTCTTGACGAAGATCTGCATG 564346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || || ||||| ||| || Sbjct 564365 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 564424 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || | |||||| || || || ||||||||||| || Sbjct 564425 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 564484 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||| | ||| | || ||| Sbjct 564485 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 564544 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || ||||||||| Sbjct 564545 CCGGTGAGGGTCTTGACGAAGATCTGCATG 564574 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118557 ATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGC 118616 |||||||| || || ||||| ||| || ||||| || ||||| |||| || | | Sbjct 569202 ATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 569261 Query 118617 TGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTG 118676 ||||| || || || ||||||||||| || ||||| ||| || | || | |||| Sbjct 569262 TGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTG 569321 Query 118677 TCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 118736 || || ||| || || | ||| | || ||||| || || || || || || |||||| Sbjct 569322 TCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGC 569381 Query 118737 ATG 118739 ||| Sbjct 569382 ATG 569384 >seq292 Length=796020 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 171448 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 171389 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| ||||| |||| || | |||||| || ||||| ||||| || || || Sbjct 171388 CAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTG 171329 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| || || | || | |||||| || ||| ||||| | ||| | || || Sbjct 171328 AATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTT 171269 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| || ||||||||||| Sbjct 171268 CCCAGTGAGAGTTTTCACGAAAATCTGCAT 171239 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || || ||||| ||| || Sbjct 171676 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 171617 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| ||||| |||| || | |||||| || ||||| ||||| || || || Sbjct 171616 CAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTG 171557 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| || || | || | ||| || || ||| ||||| | ||| | || || Sbjct 171556 AATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTT 171497 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || ||||| || |||||||||||| || Sbjct 171496 CCCAGTGAGGGTTTTCACGAAAATCTGCATGCCT 171463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433809330077620