Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15 127 2e-24 seq380 107 2e-18 seq428 104 3e-17 seq302 102 9e-17 seq763 98.7 1e-15 seq176 98.7 1e-15 seq2027 86.0 7e-12 seq652 86.0 7e-12 >seq15 Length=4650977 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| |||||||| |||| ||| || || | || || |||||||| || || || Sbjct 564611 TCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 564670 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | ||||||||| | || | || |||||| ||| |||||| ||||| || Sbjct 564671 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTC 564730 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||||| | ||||| || | |||||||||||||| || || ||||| ||| Sbjct 564731 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 564790 Query 43173 AAGATTTGCATTTTTACG 43190 ||||| ||||| ||| || Sbjct 564791 AAGATCTGCATGTTTGCG 564808 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||| || | |||| || || || || ||||| |||| | Sbjct 569385 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 569444 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| || || || | ||||||||| | || Sbjct 569445 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 569504 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||| ||| |||||| |||| || | | ||||| || | ||| | Sbjct 569505 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCC 569564 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||||| || || ||||| | ||||| ||||| Sbjct 569565 TCAAGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||| || | |||| || || || || ||||| |||| | Sbjct 569613 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 569672 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || || || || || | ||||||||| | || Sbjct 569673 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 569732 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || |||||| ||| ||| || || | || | | ||||| || | ||||| Sbjct 569733 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACC 569792 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | |||||||||||||| || || || || |||||||| ||||| || Sbjct 569793 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 569842 >seq380 Length=662588 Score = 107 bits (118), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 548190 ATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 548249 Query 60121 CACTATACTACCGAGGA 60137 |||||||||| |||||| Sbjct 548250 CACTATACTAACGAGGA 548266 >seq428 Length=446940 Score = 104 bits (114), Expect = 3e-17 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 60053 TATGAAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 ||||||||| || |||| || | ||||||||||||| |||||||||||||||||||| Sbjct 276978 TATGAAAAAGTTGTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 276919 Query 60110 GACATACTCACCACTATACTACCGAGGA 60137 | |||||||||||||||||| |||||| Sbjct 276918 GGGATACTCACCACTATACTAACGAGGA 276891 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 410253 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 410194 Query 60126 TACTACCGAGGATTGA 60141 ||||| |||||| ||| Sbjct 410193 TACTAACGAGGAGTGA 410178 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 306066 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 306007 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 306006 TACTAACGAGGAATG 305992 >seq302 Length=968941 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 207958 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 207899 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 207898 TATACTAACGAGGA 207885 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 229527 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 229468 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 229467 CTATACTAACGAGGA 229453 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 226301 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 226360 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 226361 TATACTAACGAGGA 226374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 228890 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 228831 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 228830 TACTAACGAGGA 228819 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 214080 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 214021 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 214020 TACTAACGAGGA 214009 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 226730 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 226789 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 226790 TACTAACGAGGA 226801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 228155 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 228096 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 228095 TACTAACGAGGA 228084 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 209088 GGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAG 209029 Query 60136 GA 60137 || Sbjct 209028 GA 209027 >seq763 Length=119288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 13128 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 13069 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 13068 TACTAACGAGGA 13057 >seq176 Length=1459804 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 269952 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 269893 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 269892 TACTAACGAGGA 269881 >seq2027 Length=1428 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||| | ||||| |||||| Sbjct 1085 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGAAGATACTGTCCACTA 1144 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1145 TACTAACGAGGA 1156 >seq652 Length=179840 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||| ||||| |||||||| |||||||||||| ||||| ||||||| Sbjct 137834 CTCCCCGTCGGGGAATCTAACCCCGGTCTCCCACGTGACAGGCGGGGATACTGACCACTA 137893 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 137894 TACTAACGAGGA 137905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571789116335800