Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq82 262 3e-65 seq26 102 6e-17 >seq82 Length=2326230 Score = 262 bits (290), Expect = 3e-65 Identities = 595/877 (68%), Gaps = 22/877 (3%) Strand=Plus/Minus Query 107694 AGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAA 107753 ||| | || |||||| | || |||||||| ||||| |||||| |||| |||||||| || Sbjct 592339 AGTGAGGAGGAGCTAAATTTTCCCATTGCATACTCCATGGTGATCCACGAGAAGATAGAG 592280 Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 | |||||||| || || ||| | | ||||| || |||||||| ||||| ||||| | Sbjct 592279 ATGTTTGAACGACTCCTACGATCTATTTATGCTCCGCAGAACATCTACTGCGTCCATATT 592220 Query 107814 GATGTGAAGTCCCCAGAGACTTT-CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872 || |||||| | | |||| || || ||| || |||| | |||||||||| || Sbjct 592219 GACCAGAAGTCTTCCCTGTCTTTTCACAG-GGCTGTGAAGGAAGTAGTTTCCTGCTTTCC 592161 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 |||||| || | |||||||| || | || || ||||| || |||||||||||||| Sbjct 592160 CAATGTTTTTGTAGCCAGTAAATTAGAAAGTGTTGTGTATGCTTCATGGTCCAGAGTGCA 592101 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTC---AGTGCCATGGAAGTACTT 107989 || || |||||||| ||| |||| |||| || ||| ||| | ||||| ||| | Sbjct 592100 GGCAGATCTGAACTGCATGAAAGATCTGCTGCA---CTCTGAAGTTCGGTGGAAATACCT 592044 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCT 108049 ||||||| || ||||||||||| ||||| || |||||| |||||||| |||| || Sbjct 592043 TTTGAATACCTGTGGGACAGACTTTCCCATCAAAACCAATAGGGAGATGGTGATGGCTCT 591984 Query 108050 CAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa 108109 || | | || || | |||||| ||||| |||| || | || ||||| ||| Sbjct 591983 GAAAGTCCTCAATGGGAGGAACAGCATGGAAACTGAAGTCACCAGTGTCTCCAAGAAAGG 591924 Query 108110 TCGCTGGAAATACCGCTATGAGGT-GACAGACACACTGT-ACCCTACCAG-CAAGATGAA 108166 ||||||| | |||| | | | || | || || || | | | | | | || ||| Sbjct 591923 TCGCTGGCAGTACCACCACAATGTCGCCA---ACGGCGTCATCAGAACGGACGTGA-GAA 591868 Query 108167 GGACCCTCCCCCTGATAATTTACCC-ATGTTCACAGGGAATGCCTATTTTGTGGCCTCTC 108225 | || || | || | | ||| |||||| |||| || ||||| ||||||| |||| Sbjct 591867 AAAGCCCACCGCCCATCAGTAGCCCAATGTTCTCAGGAAACGCCTACTTTGTGGTCTCTA 591808 Query 108226 GAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCA 108285 | |||||||| || | || | | ||| | || | | | | ||||||| | Sbjct 591807 GGGCCTTTGTGAAATACGTGATGCAGAACAGAGAGGTTCAGAAATTCATGGAATGGGAAA 591748 Query 108286 AAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTCCGTGGAT 108343 ||||||| || || || ||||||||| | ||||||||||| ||| | || ||| | | | Sbjct 591747 AAGACACATACAGTCCAGACGAACACATGTGGGCCACCCTGCAGAGGATG-TCC-TCGGT 591690 Query 108344 GCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||||| || || || || ||| ||| ||| || |||||| || ||||| | Sbjct 591689 TCCTGGATCAGTGCCCCCAAACGGCAAATATGACACGTCGGACATGCTGGCTCTCGCCCG 591630 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | ||||||||| || ||||| || | | || || || || || || Sbjct 591629 AGTTGTCAAGTGGTCTTATTTAACAGGAGACGTGAAAAAAGGAGCTCCGTACTATCCATG 591570 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 || | | | |||| ||| | || | || || ||||| ||||| ||| | || Sbjct 591569 TATGGGGACCTACAGGAGAGCCGTGTGTGTGTATGGCGCCGGCGACCTCCTGTGGCTCCT 591510 Query 108524 CCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 ||| | || |||||||| ||||| ||||||||||| Sbjct 591509 -GAGACAGCAGCACCTCTTTGCAAATAAGTTTGACCC 591474 >seq26 Length=3790307 Score = 102 bits (112), Expect = 6e-17 Identities = 191/278 (69%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||||||| ||||| |||||| | ||||| ||||||||||| || ||| | || ||| Sbjct 222876 AACTTTGAACGACTGCTACGAGCCATCTATGCACCTCAGAACATTTATTGTATTCATGTG 222935 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCC 107873 || || |||| || | |||| || | | ||| | ||||| |||||| Sbjct 222936 GACAAAAAATCCCAGCCCTCTGTAAAAGCTGCCATTACCAGCATCGTGTCCTGTTTCCCC 222995 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAA 107933 ||||||||||||| | | || || |||||||| || ||| | | || ||| Sbjct 222996 AATGTCTTCATGGTCGGACAGGCTGTGAGTGTGGTTTACGCTGGGTGGCCTCGTGTCCAA 223055 Query 107934 GCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGC--CATGGAAGTACTTA 107990 |||||||| ||||| |||| ||| ||| | || | |||||| ||||| ||||| Sbjct 223056 GCTGACCTCAACTGCATGGCTGAC---CTCTATGAACGCAGTGCAGAGTGGAAATACTTC 223112 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || ||||||||| |||| ||||| Sbjct 223113 ATCAACCTCTGTGGACAAGACTTCCCTCTAAAAACCAA 223150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348251885563890