Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq15 109 4e-19 seq292 98.7 8e-16 >seq15 Length=4650977 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| ||||| |||||||| || ||||||||||| | || || | |||| Sbjct 569628 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 569687 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || ||| | ||| |||||||| Sbjct 569688 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 569747 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| |||| ||||||| || Sbjct 569748 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 569807 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAA--ACTCTTATAAAT 18343 |||||||| | ||||| ||||| || ||||| || | || |||||||| Sbjct 569808 TTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTGCACCACCTTTATAAAT 569859 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| ||||| |||||||| || ||||||||||| | || || | |||| Sbjct 569400 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 569459 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | ||| |||||||| Sbjct 569460 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 569519 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||||| |||||| |||| ||||||| || Sbjct 569520 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGTT 569579 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | || || | || || ||||| Sbjct 569580 TTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || ||||||||||| || |||||||| | || || | |||| Sbjct 564590 AGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 564649 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || ||| | ||| |||||||| Sbjct 564650 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 564709 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | || ||||| | ||| ||||| | |||||| || | ||||||| | Sbjct 564710 TGGATTT-TGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 564768 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||||||||| | || || ||||| || ||||| ||| Sbjct 564769 TTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTTT 564805 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || |||||||| || ||||||||||||| || || | ||| Sbjct 564134 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 564193 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | ||| |||||||| Sbjct 564194 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 564253 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | ||| || ||| | ||||||| | Sbjct 564254 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTC 564313 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||| | || || || || || ||||| Sbjct 564314 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564345 >seq292 Length=796020 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18097 ATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 ||||||||| || | || |||| ||| || || || || || || ||||||||||| | Sbjct 171695 ATCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 171636 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 || || | |||||||| |||||||| ||| |||| ||||| || || || | Sbjct 171635 ACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAG 171576 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | |||||| ||||| ||| | | ||| || | ||| || |||| |||||| Sbjct 171575 GAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCA 171516 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || || || | ||||| || ||||| ||||| Sbjct 171515 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 171467 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| ||| || || || || || || ||||||||||| | | Sbjct 171465 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 171406 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| ||||| || ||| |||| || || || || || || Sbjct 171405 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGA 171346 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| ||||| ||| | | ||| || | ||| ||||||| |||||| Sbjct 171345 ATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 171286 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 || | ||| ||| | || || || | ||||| || ||||| ||||| |||||||| Sbjct 171285 TCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTTTAAACT 171230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379325576328825