Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq32 470 1e-127 seq146 118 9e-22 seq15 98.7 9e-16 >seq32 Length=3524602 Score = 470 bits (520), Expect = 1e-127 Identities = 1032/1539 (67%), Gaps = 29/1539 (2%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 |||||||||| ||| | |||| || |||| || ||| |||| || | || ||| Sbjct 2635721 TCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAAC 2635662 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||||| || | ||| ||| |||||| ||| ||| |||| || || ||| Sbjct 2635661 TCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTG 2635602 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || ||||| ||||||| ||| || ||| ||| Sbjct 2635601 TTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTC 2635542 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| || | || || ||| |||| | |||||||||||| |||| ||||||| Sbjct 2635541 ACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTC 2635482 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGC-TGCCTTCGTACGT 22707 || |||||||| ||||| || | | ||| ||| | ||||| ||| ||||| || Sbjct 2635481 ---TTCTCCCACATGTCGTACTGGAGGATGCCCTTACT-GACGGGCGAGCCCTCGTATGT 2635426 Query 22708 TTCGTACGGACC-ATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATA 22766 ||||| || || | | | ||||| ||||||||||| ||||||| ||| ||| || | Sbjct 2635425 CTCGTAGGGGCCGAGCTCT-GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGA 2635367 Query 22767 TAGTCTCGAAGATTTTCTTGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACG 22824 | ||||||||||| | |||| | | || ||| || ||||||| |||| || Sbjct 2635366 TGGTCTCGAAGATCTGGATGTTGA--GCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCG 2635309 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||||| | ||| || || |||| |||||| ||||| || |||||||| | || | Sbjct 2635308 CATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTT 2635249 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 || ||| | || ||||| | || || |||| ||||| | |||| | ||| Sbjct 2635248 GTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTT 2635189 Query 22945 TCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTG 23001 | |||| ||| || || | | |||||| || | | | | Sbjct 2635188 T---TTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGG 2635132 Query 23002 TACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA 23061 || || |||||| |||||| ||||| || ||||| |||||||||||||| ||| Sbjct 2635131 CGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCT 2635072 Query 23062 CGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTG 23121 |||||||| || | || || || || ||||| || || || ||||||| || ||| Sbjct 2635071 GGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 2635012 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 |||||| || | ||||| | ||||||||||||||||| ||||| || || ||| ||| Sbjct 2635011 GTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTG 2634952 Query 23182 CGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGT--ACCTGCCT 23239 ||||||||||| || ||| | ||| || | ||| | | | | ||| ||| Sbjct 2634951 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT--TCACCACCCTCTTCACCCTCCCT 2634894 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || | ||| || | ||| | | || || || | || | || ||| |||| ||| Sbjct 2634893 TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCG 2634834 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | |||||||| | ||| || | || || | |||| || Sbjct 2634833 GGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAAC 2634774 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || ||||| ||||| | |||||||| || || | ||| | | |||||| || || ||| Sbjct 2634773 AGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG 2634714 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| |||| |||| ||||| |||||||| |||||||| || ||||| | ||| Sbjct 2634713 TTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCG 2634654 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || |||||||| ||||||||||| |||||||| || |||||||||||||| ||| Sbjct 2634653 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACT 2634594 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT-- 23597 || |||||||| || | |||||||| |||| ||| || | | | ||| Sbjct 2634593 CTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAA----TGTAGCTTCC 2634538 Query 23598 --TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 | | ||| | | | || | || || || || | || || || || | ||| Sbjct 2634537 CGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGC 2634478 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 ||| || ||||| |||||||||||||| ||||||||||| || || | | || || ||| Sbjct 2634477 GCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAA 2634418 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 || |||| |||| | || |||| ||| || ||||| |||||| || Sbjct 2634417 GCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 2634358 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 || | | ||||| || ||||| || |||||||| || |||||||| ||||| Sbjct 2634357 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTG 2634298 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 || || | | || | ||| | ||||| || || | |||| || ||||| || Sbjct 2634297 GATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGAT 2634238 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 || | ||| || || || | || || || || || || Sbjct 2634237 CTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAA 2634199 >seq146 Length=1599760 Score = 118 bits (130), Expect = 9e-22 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||| | ||||| || || || || || || |||||||| |||| || || Sbjct 271714 CACCTCATCTCTACTTGTGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGT 271773 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||| | || | ||||| | ||||||||||||||||||||||| Sbjct 271774 GCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 271833 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||||||||||||||| || Sbjct 271834 ACCCGTCTCTGTCTGCGACTCGATGATGGC 271863 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||| || || || ||||| | || ||||||| || | ||| | Sbjct 272182 TTTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTC 272241 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| |||| |||||||| || |||||||| ||||||| Sbjct 272242 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCC 272301 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || | || || || ||||||| Sbjct 272302 ACGGCTCCAGGTACACAGAGAAGGCCCCTGGTCTCT 272337 >seq15 Length=4650977 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| || || |||||||| |||||| | || || || | Sbjct 564806 CAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGC 564747 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | |||||| | ||| ||| ||||| ||| | || || | Sbjct 564746 CCAGCGACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTG 564687 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || || || || || ||| ||||||| || || || | Sbjct 564686 ACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACT 564627 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || ||||||||||| || || || || || || | |||||||| || Sbjct 564626 ACAATATCCAAAAAGAATCCACCCTCCACCTTGTCCTCCGTCTGAGGGGTGG 564575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445744195261200