Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq32 448 6e-121 seq146 107 2e-18 seq169 93.3 5e-14 >seq32 Length=3524602 Score = 448 bits (496), Expect = 6e-121 Identities = 1295/1981 (65%), Gaps = 35/1981 (2%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 |||||||||||| | | | || | | | ||||| ||||| || ||||| | | Sbjct 2635764 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 2635705 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || | | | ||||| || ||||| || | ||||| ||||| |||| || || Sbjct 2635704 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 2635645 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| |||| || | ||||| || || |||| || || || Sbjct 2635644 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 2635585 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 2635584 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 2635525 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNN 62586 || || || || | | ||| | ||| || || | ||| | | ||| Sbjct 2635524 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCG-- 2635467 Query 62587 NNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTT 62646 || || || || || |||||| || ||| || | ||||| || || || || Sbjct 2635466 -----TACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGA 2635412 Query 62647 CCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCT 62706 || | || |||| || || ||||| | || ||| || ||||| || ||||||| Sbjct 2635411 GCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCT 2635352 Query 62707 TCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62766 | || || || ||||| ||||| || || |||| | || || || || | Sbjct 2635351 GGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCAT 2635292 Query 62767 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62826 | || | || || || || || ||||| || || || | ||| || || | || |||| Sbjct 2635291 CGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTT 2635232 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 | || | || || ||||| || || || || || ||||| ||| | || ||||| ||| Sbjct 2635231 CGGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG 2635172 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATG 62943 || ||| || || || || || ||| | || ||||||| | | Sbjct 2635171 TGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGG 2635112 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTC 63001 | | || ||||| || || ||||| ||||| | | | | | || | | | ||| Sbjct 2635111 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTC 2635054 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 ||||| || || || || ||||| || || | || || || || ||||| |||| || Sbjct 2635053 TGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCA 2634994 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 || ||||| || || ||| | || || || ||||| |||| || || || || || | Sbjct 2634993 AGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTA 2634934 Query 63122 CCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTAT 63180 ||||| | || | ||||| | | || |||| ||| | || ||| || | Sbjct 2634933 CCAGAGCTGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGT 2634875 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | | |||||||| |||||||| | ||||| | ||||| || ||||||| Sbjct 2634874 AGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACA 2634815 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 |||| ||||| || || || ||||| ||||| || || || || ||||| | | Sbjct 2634814 TCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGG 2634755 Query 63301 C-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359 | || ||| || ||||| | ||| || ||||| |||||||| ||||| || || || ||| Sbjct 2634754 CGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGG 2634696 Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419 || | | | || | ||||||||||||| ||| ||||| | | || || | ||| Sbjct 2634695 AAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTG 2634636 Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479 || || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | Sbjct 2634635 TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAAT 2634576 Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539 ||||| || | || ||||| |||| || |||| ||| | | || || || | Sbjct 2634575 CCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACC 2634516 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 | | || || ||||| || || || || | ||||| | || | ||||| ||| Sbjct 2634515 GCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAG 2634456 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 |||||||| ||||| || || ||||| | || || || ||||| |||| || | || Sbjct 2634455 ATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGG 2634396 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | || || || || || | ||| ||||| ||||| || ||||| || || || || || Sbjct 2634395 TTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGG 2634336 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 ||||| ||||| || || | ||| || || | || || || || | || | ||| Sbjct 2634335 TTGTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATG 2634276 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | ||||||||| || | || | | ||| ||| || |||| || |||||| ||| Sbjct 2634275 AGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCC 2634216 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 | ||| || ||||| || ||||||| || || |||| |||||||| || |||||| Sbjct 2634215 AGAGTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTG 2634156 Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATG 63958 || ||||| | || | || || || | || | ||| || || || ||||| || Sbjct 2634155 AGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTG 2634097 Query 63959 TTTCCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 64015 || || || ||| || || ||| ||| | || |||||||| || || || | Sbjct 2634096 ---CCGTTTGTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACAC 2634040 Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 || || || |||||||| || || || | ||| || || ||||| || ||||| || || Sbjct 2634039 CTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTC 2633980 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 64135 || |||| || || ||||| || || || || || || ||||| | || || || Sbjct 2633979 GGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGT 2633920 Query 64136 TGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATG 64195 || || || | || | || || || |||||||| | || | | ||||| | | Sbjct 2633919 GGTGACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCTGGATCCACAAA 2633860 Query 64196 ATCCGTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAACATGA 64254 |||| ||| | ||| ||||| || |||| || || || ||||||||||| ||||||| Sbjct 2633859 GTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGA 2633801 Query 64255 C 64255 | Sbjct 2633800 C 2633800 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || ||||| || |||| || || || ||||| | Sbjct 2636027 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 2635968 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 2635967 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 2635908 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 2635907 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 2635859 >seq146 Length=1599760 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 ||||||||||||| ||||| || || |||||| || | || || || || || || | Sbjct 268868 TCCATCCGTAAAAGTGCATGCTGGTGAGTTTGCCGTAGTTTGGCTCAGCGATGTGAATGT 268927 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||| ||||| ||||||||| ||| || | ||||| ||||| || | || || | Sbjct 268928 TCAGAGACTGACTCTGATCGATGTAGGTGCCACGATCTGCTGCCATCTTCAGGACGGTTT 268987 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62281 | || | |||||||||| |||||||| | |||| | ||||||||| Sbjct 268988 TCTGGGAGATTTCCCAAACTGTTTTATAGAGCTGCTTCAGATCTTCTGG 269036 >seq169 Length=1474717 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||||| ||| || | ||||| || || || || ||||| ||||| | ||| | Sbjct 1314851 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTTAGGCCAGGCATCAGGCCTCTCTTCT 1314792 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| ||||| || || || ||||||||||| || || ||||| |||| Sbjct 1314791 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 1314732 Query 33724 CAATAAGTCTCTCTCC 33739 | | | ||||||||| Sbjct 1314731 CCACCACTCTCTCTCC 1314716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629786227210800