Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq292 105 7e-18
seq15 91.5 1e-13
>seq292
Length=796020
Score = 105 bits (116), Expect = 7e-18
Identities = 146/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| ||||| ||||||||||||
Sbjct 171435 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTACCA 171376
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| || | ||||| || ||||| ||||||||||| || ||| | |||| ||
Sbjct 171375 GCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATC-CTGAATCTTTGCCTT 171317
Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
| |||| || | ||||| ||||||||||||| | ||| | ||||| || || | |
Sbjct 171316 CAC-GTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTGAGAG 171258
Query 139746 TTTTTACGAATATTTGCAT 139764
|||| ||||| || |||||
Sbjct 171257 TTTTCACGAAAATCTGCAT 171239
Score = 102 bits (112), Expect = 8e-17
Identities = 145/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| ||||| |||||||| |||
Sbjct 171663 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCA 171604
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || ||||| ||||||||||| || ||| | |||| ||
Sbjct 171603 GCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATC-CTGAATCTTTGCCTT 171545
Query 139688 AGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
| |||| || | || || ||||||||||||| | ||| | ||||| || || | |
Sbjct 171544 CAC-GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 171486
Query 139746 TTTTTACGAATATTTGCAT 139764
|||| ||||| || |||||
Sbjct 171485 TTTTCACGAAAATCTGCAT 171467
>seq15
Length=4650977
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || | | ||| | ||| | ||| | ||||| ||||| || ||||| || |||
Sbjct 564116 TGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCG 564175
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|| |||| || || ||||| || || ||| ||||||| | ||||| || ||
Sbjct 564176 GACAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 564235
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| ||||| || || || |||||| || | | || | |||||| |||| |||
Sbjct 564236 GGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCC 564295
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || | ||| | ||||||||||| | || || ||||| || |||||
Sbjct 564296 ACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564345
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || |||||||| || || || || || |||| ||||| ||||| || ||
Sbjct 564605 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 564664
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || || || ||||| || || || |||||| |||
Sbjct 564665 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 564724
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||| ||||||||||||| | ||| | || |||||||| | ||
Sbjct 564725 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 564784
Query 139748 TTTACGAATATTTGCAT 139764
|| || || || |||||
Sbjct 564785 TTGACAAAGATCTGCAT 564801
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620
||||| || ||||| || || ||||| || || || |||| ||||| |||||
Sbjct 564370 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTG 564429
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|| || ||| ||||||| | ||||| || || || ||||| || || || ||| ||
Sbjct 564430 CTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTT 564489
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
|| | | || | |||||| ||||||| ||||| | ||| | |||||||||||
Sbjct 564490 GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGT 564549
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| || || ||||| || |||||
Sbjct 564550 GAGGGTCTTGACGAAGATCTGCAT 564573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496039289812000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |