Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq32 450 2e-121 seq169 102 1e-16 seq22 93.3 6e-14 >seq32 Length=3524602 Score = 450 bits (498), Expect = 2e-121 Identities = 1302/1979 (66%), Gaps = 31/1979 (2%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||||||||| | ||| || | | | ||||| ||||| || ||||| | | Sbjct 2635764 CTGAATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCG 2635705 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | | | ||||| || || || || | || || ||||| |||| || || Sbjct 2635704 CTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCT 2635645 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 2635644 GCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 2635585 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||| ||||| || |||| || | || || || | |||| | ||| Sbjct 2635584 GGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAT 2635525 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || || || |||| | ||||| || || | ||| | | | | ||| | || Sbjct 2635524 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCGGTCGGCGTCTTC-TCCCACATGTCG 2635467 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || || || || ||||| || || || |||||| || || || || || | Sbjct 2635466 TACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCT 2635407 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 |||| | ||| || || ||||| | || ||| || ||||| ||||| |||| | Sbjct 2635406 GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 2635347 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 ||||| || ||||| |||| || || |||| | || || || || || || Sbjct 2635346 TTGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCC 2635287 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 | || || || || || ||||| || || || | ||| || || | || ||||| || Sbjct 2635286 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGG 2635227 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | || || ||||| || || || || || ||||| || | || ||||| ||| || Sbjct 2635226 ACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACG 2635167 Query 79564 TCCTTTAGTTTGAGAAAATCAAATCGTCCA-TCTA---TTACAAACATGTTCAACGCGAC 79619 || || || || || |||| ||| | || ||||||| | |||| Sbjct 2635166 GAGGCCAGCTTCTTGAAGTCGAAA-GTCCGCTCTGGCGTGACGTACATGTTGAGGGCGAT 2635108 Query 79620 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATTTCAGTG 79677 || ||||| || || ||||| ||||| | | | | | || | | | || ||| Sbjct 2635107 GGAGGCCAGGTTGCAGACGGCCACCTCGTC--CTTGCTGGTGTACTCCACCACCTCTGTG 2635050 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 |||||||| || || || ||||| || | || || || || ||||| |||| || || Sbjct 2635049 CAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCG 2634990 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 ||||| || || ||| | || || || ||||| |||| || || || || || | |||| Sbjct 2634989 TCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAG 2634930 Query 79798 A-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATT--GTGTATAT 79854 | | || | ||||| | | ||| ||| ||| | || ||| ||||| | Sbjct 2634929 AGCTGCT-GCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAG 2634871 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 || |||||||| |||||||| ||||| | || ||||| ||| ||||||||| Sbjct 2634870 CTTC--TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATC 2634813 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 79973 || ||||| || | || |||| ||||| || || || || ||||| | || Sbjct 2634812 AAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCG 2634753 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 || ||| || ||||||| ||| |||||||| |||||||| ||||| || || || ||||| Sbjct 2634752 TAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAA 2634694 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | || | ||||||||||||| ||| ||||| | | || |||| ||||| Sbjct 2634693 GTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTT 2634634 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || ||||| || | ||| | ||| ||||| || |||||||||| ||| || | | || Sbjct 2634633 GCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCC 2634574 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||| | || ||||| |||| || |||||||| | | || || || | | Sbjct 2634573 GTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGC 2634514 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | || || ||||| || || || || | ||||| | || | || || ||||| Sbjct 2634513 CACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGAT 2634454 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 80333 ||| || ||||| || || ||||| | || || || ||||| |||| || | || | Sbjct 2634453 GCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTT 2634394 Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 || || || || || | ||| ||||| ||||| || ||||| || || ||||| || || Sbjct 2634393 GGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTT 2634334 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| ||||| || || | || || || | || || || |||| || | ||| | Sbjct 2634333 GTAGGTCTCGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAG 2634274 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 ||||||||| || | || | | || || || |||| || ||| || |||| Sbjct 2634273 CATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAG 2634214 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||| || ||||| || ||||||| || || |||| |||||||| || || ||||| Sbjct 2634213 AGTCTTGAAACCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATTGAG 2634154 Query 80574 TTTATCCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAATGTT 80632 ||||| | || | || | || | || | ||| || || || ||||| || Sbjct 2634153 GCGGTCCTTGTTTTCCATGACGATGTCGAGCGT-CTCCTTGGAGATCATGGGAGAGTG-- 2634097 Query 80633 TCCCATTTTT---AGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 80689 || || || ||| || || ||| ||| | || |||||||| || || || | | Sbjct 2634096 -CCGTTTGTTCAGAGGGTTGACGTAGGCGAACAGGTCTTCCATCACCTCGCTGAACACCT 2634038 Query 80690 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTG 80749 | || || |||||||| || || || ||||| || || ||||| | ||||| || || | Sbjct 2634037 TCTTGGTCTCCTTGTGCAGGTTGGAGACGGCAATCCTCGCGGCCAGGATGGCGTAGTCGG 2633978 Query 80750 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 80809 | |||| || || ||||| || || || || || || ||||| | || || || | Sbjct 2633977 GGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCGCTAGCGTGTCTAGCTCCACGGTGG 2633918 Query 80810 TTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 80869 | || || | || | || ||||| |||||||| | || | | ||||| | | | Sbjct 2633917 TGACGCCGCTGTACAAGCCCTGGATCACCTTCATGGTGATCTGAGCTGGATCCACAAAGT 2633858 Query 80870 CAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 80927 | | ||| | ||| || || || |||| || || || ||||||||||| |||||||| Sbjct 2633857 CCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGGGAGGTGATTTTATCGAACATGAC 2633800 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || ||||| || |||| || || || ||||| | Sbjct 2636027 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTCGGCTCAGCGATGTGGATGT 2635968 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || |||||||||||||| | |||||| ||||| | | | |||| Sbjct 2635967 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCCTCAGCACGGTCT 2635908 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 78953 | || | |||||||||| |||||||| | |||| | || ||||| Sbjct 2635907 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGGTCCTCTGG 2635859 >seq169 Length=1474717 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||||| ||| || || |||||| || || || || ||||| ||||| | ||| | Sbjct 1314851 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTTAGGCCAGGCATCAGGCCTCTCTTCT 1314792 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || || || |||| Sbjct 1314791 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 1314732 Query 50102 CAACAAGTCTCTCTCC 50117 | || | ||||||||| Sbjct 1314731 CCACCACTCTCTCTCC 1314716 >seq22 Length=4020106 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| || ||||| ||||||||||| | || || || ||||| ||||| | ||| | Sbjct 3875968 CCTCGTCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGGCCTGGCATGAGGCCTCTCTTCT 3875909 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| | || | || ||||| || || |||||||| || || ||||| || || | Sbjct 3875908 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAGATCCCCTCCACTGCTGCGAAAG 3875849 Query 50102 CAACAAGTCTCTCTCC 50117 | ||||| | ||| || Sbjct 3875848 CCACAAGACGCTCCCC 3875833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718233021235400