Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq32 109 8e-19 seq169 100 4e-16 >seq32 Length=3524602 Score = 109 bits (120), Expect = 8e-19 Identities = 364/562 (65%), Gaps = 22/562 (4%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| || | || || ||||| ||| | ||||| | | | || Sbjct 2634556 ACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGC 2634615 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || | || || || | ||| | ||| ||||||| ||| Sbjct 2634616 TACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGAACCGTGG 2634675 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| ||||| || ||||| | ||| || || ||| | || || ||| || Sbjct 2634676 CACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGA 2634735 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||| ||| | || || || | ||| | || || ||||||||||| | || | Sbjct 2634736 GCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGTGGAGAGC 2634795 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||| | | ||||| | | ||||| ||| | || ||||| ||| ||| ||| Sbjct 2634796 AACCAGG------ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCCGGGCTGGACGAGTGC 2634849 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAG-AGGGCCGAT-ACG 97155 ||||| || ||||| ||| ||| ||||| || ||| | | |||| | | | | Sbjct 2634850 TGGGGAGAGGAGTTCGAG---AAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGAAG 2634906 Query 97156 TGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTG 97215 | | | | | ||| || || ||| | |||||| | | | ||| || || | Sbjct 2634907 AGGGTGGTGAAGGCGCAGCAG--CTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCG 2634964 Query 97216 GAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGG 97275 | || || ||||| ||||||||||| | || | || |||||||| | || ||| Sbjct 2634965 GGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGG 2635024 Query 97276 GCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGA 97335 |||||||||| || ||| || ||||| || | || |||||| || ||||||| Sbjct 2635025 GCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAGG 2635084 Query 97336 CGGCAGTTTGCGTTCTGGCATC 97357 ||| || ||| ||||| || Sbjct 2635085 TGGCCGTCTGCAACCTGGCCTC 2635106 >seq169 Length=1474717 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| ||||||| ||||| ||||| ||||| |||||||| || ||| || || ||| Sbjct 1314719 GAGAGAGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCC 1314778 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATA 125540 ||||| ||||| |||||| | || || ||||| || || || ||| |||||| | || Sbjct 1314779 ATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCTGGCCTAACCTTCAGCAACGAGCTCATC 1314838 Query 125541 TCTCGAGACGAGG 125553 ||||||||||| Sbjct 1314839 AGTCGAGACGAGG 1314851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741022285988600