Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq292 172 1e-37 seq15 156 1e-32 seq22 95.1 3e-14 >seq292 Length=796020 Score = 172 bits (190), Expect = 1e-37 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || ||||| Sbjct 171468 ATGCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 171409 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| |||||||| ||||||||||| || |||||| Sbjct 171408 GACAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGA 171349 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||||||||||||||| || || || || | ||| || || || || Sbjct 171348 GGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCC 171289 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || ||||| ||||| ||||| || ||||| || || |||||||| || Sbjct 171288 ACCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 171236 Score = 163 bits (180), Expect = 7e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| || || || | || || || || | || || || ||||| || || ||||| || Sbjct 171694 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 171635 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | || ||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 171634 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 171575 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||||||||||||||||||||| || || || || | |||||| || || || || Sbjct 171574 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 171515 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || ||||| ||||| || ||||| || || |||||||| Sbjct 171514 CTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 171467 >seq15 Length=4650977 Score = 156 bits (172), Expect = 1e-32 Identities = 175/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | ||| ||||||||||| || || |||||| Sbjct 569610 ATGCCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCA 569669 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || ||||| ||||| || |||||||| || ||||| Sbjct 569670 GACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 569729 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| ||||| || || ||||| || | ||| || || || || Sbjct 569730 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCC 569789 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || || || || || || ||||| ||||| |||||||| ||| Sbjct 569790 ACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTTG 569843 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || ||||| || || || | || || || || || || || Sbjct 564149 GTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 564208 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || ||||| || || || || |||||||| || || || || Sbjct 564209 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 564268 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||||| ||||| || || || || || ||||| || || || || Sbjct 564269 ACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 564328 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 564329 TTGACGAAGATCTGCAT 564345 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | ||| ||||||||||| || || |||||| Sbjct 569382 ATGCCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCA 569441 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || |||||||| || ||||| Sbjct 569442 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGG 569501 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| || || || || || || || | ||| || || || || Sbjct 569502 GGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCC 569561 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || || || || | || |||||||| Sbjct 569562 CCCTCAAGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611 >seq22 Length=4020106 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || ||||| || || || || || || ||||| || || || || || ||||||| ||| Sbjct 3875845 GTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCTATCTACTGG 3875904 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| |||||||| | || | ||| |||||| | || ||||||||| Sbjct 3875905 CTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATTAGCAGGGAC 3875964 Query 269258 GA 269259 || Sbjct 3875965 GA 3875966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151339612116380