Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq39 159 5e-34
seq283 113 6e-20
seq93 107 3e-18
>seq39
Length=3324142
Score = 159 bits (176), Expect = 5e-34
Identities = 177/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800
|||||||| |||| || || || || ||||||||||| |||||||| | || |||
Sbjct 2726873 TTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAG 2726814
Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860
|| ||| ||| |||| |||||||||||||| || |||||||||| ||| | || ||
Sbjct 2726813 CAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTC 2726754
Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920
|| || || |||||||| || |||||||| ||||| | | |||| ||| | |||||||
Sbjct 2726753 TCCCCAAAAATGGCGTTCGGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGCTCCACA 2726694
Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976
|| |||| ||| ||||| || | ||| ||| || ||||| || ||||||||
Sbjct 2726693 GCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 2726638
Score = 127 bits (140), Expect = 3e-24
Identities = 183/256 (71%), Gaps = 4/256 (2%)
Strand=Plus/Minus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| || |||| |||||| |||| |||||||| ||| ||||||| ||| ||||| ||
Sbjct 2725321 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 2725262
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| |||| ||| || ||||| | |||||| || | ||||||||| || |||||||||
Sbjct 2725261 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 2725202
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
||||| || || ||||| || || ||||| || || ||||| | ||| | || ||
Sbjct 2725201 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGCGAAGCGCTGAGAGTCTGGG 2725142
Query 9790 ACTTCGGGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTT 9847
|| | || || ||| ||| | ||||| ||||| || ||| || || |||| |
Sbjct 2725141 ACGTGTGGCGGGTAGTGCATTTCAGCACC--AACATCCTTAACCAGTGGAGGGTACACCT 2725084
Query 9848 CACCGTCAATAATCTG 9863
| |||| | ||||||
Sbjct 2725083 CTCCGTTTACAATCTG 2725068
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 10284 AAGTCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343
|| |||||| ||| || | ||| ||||| || || ||||| ||||| || |
Sbjct 2724361 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGA 2724302
Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403
| ||| ||||| || ||||| | |||||||||||| |||| | ||||||||||||||
Sbjct 2724301 GTGTAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAA 2724242
Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATC 10431
| ||||| |||||||||| || |||||
Sbjct 2724241 GTAGGAGGACTGTCAATCATATGGGATC 2724214
>seq283
Length=827976
Score = 113 bits (124), Expect = 6e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800
|| ||||| | || || || | || ||||| |||||||| |||||||| | ||||||
Sbjct 67818 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 67759
Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860
|| ||| ||| ||| |||||||||||||||||| ||||| |||| || | |||||
Sbjct 67758 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 67699
Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920
|| ||||| || | || || | ||| |||| || || |||| ||| || || | |
Sbjct 67698 TCTCCGAATATAGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 67639
Query 8921 GCCTCGATGTCTCCGTA 8937
|| ||||| || || ||
Sbjct 67638 GCGTCGATATCCCCATA 67622
>seq93
Length=2237016
Score = 107 bits (118), Expect = 3e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821
|| || |||||||||||||| |||||||| | || ||| |||| ||| | | |||
Sbjct 504091 TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATTCCCAAGCAGG 504150
Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881
||||| ||||| || || || |||| ||| | |||||||| ||||| |||| ||||||
Sbjct 504151 CCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATATGGAGTTGGGG 504210
Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940
|| | || |||| || || || | || ||||||| || || ||||| || || ||
Sbjct 504211 CGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCCAGGGCGTCAATGTCACCATAGAG 504269
Score = 104 bits (114), Expect = 3e-17
Identities = 122/165 (74%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672
|| ||||||||||||| |||||||| || || || |||||| ||| ||||||||
Sbjct 510719 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCA 510778
Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732
| ||||| | || ||||| | |||||| ||||| |||||||| || |||||||| ||
Sbjct 510779 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 510838
Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9777
|| || || || || || || | || || |||| || || |||
Sbjct 510839 AGGCCTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGC 510883
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708489506608400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |