Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq39 159 5e-34 seq283 113 6e-20 seq93 107 3e-18 >seq39 Length=3324142 Score = 159 bits (176), Expect = 5e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| |||| || || || || ||||||||||| |||||||| | || ||| Sbjct 2726873 TTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAG 2726814 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| |||| |||||||||||||| || |||||||||| ||| | || || Sbjct 2726813 CAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTC 2726754 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || || |||||||| || |||||||| ||||| | | |||| ||| | ||||||| Sbjct 2726753 TCCCCAAAAATGGCGTTCGGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGCTCCACA 2726694 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 || |||| ||| ||||| || | ||| ||| || ||||| || |||||||| Sbjct 2726693 GCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 2726638 Score = 127 bits (140), Expect = 3e-24 Identities = 183/256 (71%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || |||| |||||| |||| |||||||| ||| ||||||| ||| ||||| || Sbjct 2725321 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 2725262 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||| ||| || ||||| | |||||| || | ||||||||| || ||||||||| Sbjct 2725261 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 2725202 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || ||||| || || ||||| || || ||||| | ||| | || || Sbjct 2725201 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGCGAAGCGCTGAGAGTCTGGG 2725142 Query 9790 ACTTCGGGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTT 9847 || | || || ||| ||| | ||||| ||||| || ||| || || |||| | Sbjct 2725141 ACGTGTGGCGGGTAGTGCATTTCAGCACC--AACATCCTTAACCAGTGGAGGGTACACCT 2725084 Query 9848 CACCGTCAATAATCTG 9863 | |||| | |||||| Sbjct 2725083 CTCCGTTTACAATCTG 2725068 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10284 AAGTCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 10343 || |||||| ||| || | ||| ||||| || || ||||| ||||| || | Sbjct 2724361 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGA 2724302 Query 10344 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAG 10403 | ||| ||||| || ||||| | |||||||||||| |||| | |||||||||||||| Sbjct 2724301 GTGTAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAA 2724242 Query 10404 ATGGGAGGGCTGTCAATCAAATCGGATC 10431 | ||||| |||||||||| || ||||| Sbjct 2724241 GTAGGAGGACTGTCAATCATATGGGATC 2724214 >seq283 Length=827976 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 || ||||| | || || || | || ||||| |||||||| |||||||| | |||||| Sbjct 67818 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 67759 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 || ||| ||| ||| |||||||||||||||||| ||||| |||| || | ||||| Sbjct 67758 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 67699 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || ||||| || | || || | ||| |||| || || |||| ||| || || | | Sbjct 67698 TCTCCGAATATAGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 67639 Query 8921 GCCTCGATGTCTCCGTA 8937 || ||||| || || || Sbjct 67638 GCGTCGATATCCCCATA 67622 >seq93 Length=2237016 Score = 107 bits (118), Expect = 3e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || || |||||||||||||| |||||||| | || ||| |||| ||| | | ||| Sbjct 504091 TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATTCCCAAGCAGG 504150 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| ||||| || || || |||| ||| | |||||||| ||||| |||| |||||| Sbjct 504151 CCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATATGGAGTTGGGG 504210 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | || |||| || || || | || ||||||| || || ||||| || || || Sbjct 504211 CGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCCAGGGCGTCAATGTCACCATAGAG 504269 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 || ||||||||||||| |||||||| || || || |||||| ||| |||||||| Sbjct 510719 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCA 510778 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 | ||||| | || ||||| | |||||| ||||| |||||||| || |||||||| || Sbjct 510779 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 510838 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9777 || || || || || || || | || || |||| || || ||| Sbjct 510839 AGGCCTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGC 510883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708489506608400