Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq32 277 2e-69 seq146 118 1e-21 seq292 113 4e-20 seq15 111 1e-19 >seq32 Length=3524602 Score = 277 bits (306), Expect = 2e-69 Identities = 990/1514 (65%), Gaps = 54/1514 (4%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||| ||||| |||| || ||| | || || | ||| ||| | | Sbjct 2635676 TTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 2635617 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || ||||||||| ||||| | Sbjct 2635616 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGC 2635557 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| || ||| | ||||| ||| ||| ||||| Sbjct 2635556 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 2635497 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || |||||| || ||||||||||||||||| | ||||||| ||| |||| | Sbjct 2635496 AGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTACTGACGGGCGAG 2635437 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | | ||| ||| || | || ||||| ||||| || |||||||| | Sbjct 2635436 CCCTCGTATGTCTCGTAGGGGCCG--AGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGG 2635379 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||||| || || ||||||||||| ||||| ||| ||| Sbjct 2635378 CGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGA 2635319 Query 145416 ACGGCATG-CGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 |||| ||| |||| ||| | || |||||||| || ||||| | || | ||||| ||| Sbjct 2635318 ACGG-ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGC 2635260 Query 145475 CGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGA 145529 | || | ||||| ||| | ||| ||| | ||| | || ||| ||||| Sbjct 2635259 CTGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTA-ATTGAT----GTCGA 2635205 Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAA 145589 | || || || | |||| ||| | |||||| || | | || ||| | ||||| | Sbjct 2635204 TGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGA 2635145 Query 145590 A---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAA 145646 | ||| ||| ||| ||| | |||| |||||| || |||| || || | Sbjct 2635144 AAGTCCG---CTCTGGCGTGACGT-ACA--TGTTGAGGGCGATGGAGGCCAGGTTGCAGA 2635091 Query 145647 CTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGA 145706 | ||| ||| || | | |||| | || | ||| | ||| | ||||| ||||||| Sbjct 2635090 CGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGA 2635031 Query 145707 TGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACG 145766 |||| ||||| || ||||| || || ||||||||||| |||||||||||||||||||| | Sbjct 2635030 TGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGG 2634971 Query 145767 GTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCAC 145824 | || || || ||| | ||| | ||| || || || | |||||| ||| Sbjct 2634970 GCGTCCCGGTTTCGGTCTGGGACTCGATGAT--GGCGTACCAGAGCTGCTGCGCCTTCAC 2634913 Query 145825 CTGCTGCTGGTAGCGGCCCT--CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAA 145882 | | || | | |||| |||| || ||| | ||||||||| ||| ||| | Sbjct 2634912 CACCCTCT-TCACCCTCCCTTCCTTC-TCATATCTGGTGTAGAGCTTCTCGAACTCCTCT 2634855 Query 145883 CCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTG 145942 || |||| ||| ||| |||||||||| | |||||||||||| ||||| | |||| Sbjct 2634854 CCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTG 2634795 Query 145943 GCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCG 146000 | || | || ||| |||| || || | ||||| ||||| | | ||| | || Sbjct 2634794 CTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCT 2634735 Query 146001 CTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060 || ||| ||||| || |||| ||||| | || | | | ||| || Sbjct 2634734 CTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGT 2634677 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGT 146117 |||||||||| | || | ||||| ||| || | || | ||||| |||||||| |||| Sbjct 2634676 GCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGT 2634617 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || || ||||||| | || | || ||| || | | ||| ||| |||||| | Sbjct 2634616 AGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGG 2634557 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGC 146237 | | || | | || || || | ||| || |||||||| || || Sbjct 2634556 TGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAG 2634497 Query 146238 CGTACTTGGATAT-AGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 || ||||||| || ||| ||||| | || || ||||||||||| || ||||| ||| Sbjct 2634496 CGGACTTGGAAATGAGC-GCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCG 2634438 Query 146297 --CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGG--CGTCCCCGCCGA 146352 |||| ||| |||||| ||||| | ||| ||||| | ||| ||||| || Sbjct 2634437 TCCTTC--ATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGC--CGGTTGGTCCCGGCGTT 2634382 Query 146353 GAACAACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGA 146411 ||| | ||||| ||||| || || || || || | || | || || |||| Sbjct 2634381 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGGAGGTTGTAGGTCTCGA 2634323 Query 146412 TAGCGTCTTGAATGTCGTCG-CCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGG 146470 | || | | |||||| ||| || || || || | | || | |||||||||||| || Sbjct 2634322 TGGCAGCGTCAATGTC-TCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGC 2634264 Query 146471 GGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTAT 146530 |||||||| ||||||| || ||||| | || ||| | |||||| || ||| | Sbjct 2634263 GGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAA 2634204 Query 146531 CCGAAAAATTTGTA 146544 ||||| || ||||| Sbjct 2634203 CCGAAGAAGTTGTA 2634190 >seq146 Length=1599760 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||||| |||||||| | ||| | |||||| | |||||||| |||||||||||||| | Sbjct 271731 TGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 271790 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | | ||||||||||| ||||||||||||||||||||||| || ||||| ||||| Sbjct 271791 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCG 271850 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 271851 ACTCGATGAT 271860 >seq292 Length=796020 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || || ||||| | || | ||| |||||||| || |||||||| || Sbjct 171466 GCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 171407 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||| || || || |||||| | ||||||||| ||||| Sbjct 171406 CAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGG 171347 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || |||||||| || ||| | | ||| || | | ||| | || || ||| ||| | Sbjct 171346 AATGCCTTCTTTATCC-TGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCA 171288 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || |||||||| |||||||||||||| Sbjct 171287 CCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 171239 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||| |||||||| || |||||||| || || |||||| Sbjct 171681 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA 171622 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||| ||||| || |||| | | ||||||||| ||||| || |||||||| Sbjct 171621 TCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTA 171562 Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| | | ||| || | | ||| | ||||| ||| ||| | || | ||| | Sbjct 171561 TCC-TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGAT 171503 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 ||| || || || || ||||| ||||||||||||||| || Sbjct 171502 GGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATGCCT 171463 >seq15 Length=4650977 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | || | ||| || || || || |||||||| ||| Sbjct 564118 GCCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGA 564177 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | | ||||||||| || || Sbjct 564178 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 564237 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || |||||| ||||| | ||| | || ||| ||| || | Sbjct 564238 GATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCAC 564297 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 564298 TTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 564346 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||| || || | || | || || || || || |||||||| || Sbjct 569384 GCCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGA 569443 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 569444 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 569503 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || |||||| ||||| | ||| | || || ||| ||| Sbjct 569504 GATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCC 569563 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| ||||| || || || |||| ||||||||| Sbjct 569564 CTCAAGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCATG 569612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471989287862400