Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1193 118 7e-22 seq786 118 7e-22 seq317 118 7e-22 seq515 116 2e-21 seq1960 86.0 4e-12 seq292 84.2 1e-11 >seq1193 Length=26938 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 3012 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 2953 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2952 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2918 >seq786 Length=140891 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 124677 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 124618 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 124617 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 124583 >seq317 Length=273463 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||| | || ||||| || |||||||| Sbjct 180119 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGACAGTGGGAATCTCGT 180060 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 180059 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 180025 >seq515 Length=310103 Score = 116 bits (128), Expect = 2e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 42802 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATACCAAAAACG 42743 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| ||||||| | ||||| || | Sbjct 42742 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGATATGCTTGATGGGT 42683 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 42682 TCATCAGAAAATTTGTGCTGTGTCCTGAGTGTGACAACCCTGAAACTGACCT 42631 >seq1960 Length=1882 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||| ||||||||||||||| | ||||||||| |||||||||||| | Sbjct 1216 CTCTCTTCAAAGTTATTTTCAACTTTCCCTTAAGGTACTTGTCGACTATCGGTCTCGTGC 1275 Query 20009 TAATATTTAGCCTTA 20023 |||||||||||| Sbjct 1276 CGGTATTTAGCCTTA 1290 >seq292 Length=796020 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| || | ||||| || || ||| |||||| || || ||||| || ||| Sbjct 171465 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 171406 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| || ||||| ||||| | || || || | || Sbjct 171405 AGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGA 171346 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| ||| ||| |||||| |||| | || || | || || Sbjct 171345 ATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 171286 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | ||||| || || || || | ||||||||||| |||||||| ||| Sbjct 171285 TCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTTT 171235 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| || | ||||| || || ||| |||||| || || ||||| || ||| Sbjct 171693 CCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAC 171634 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | ||||| || ||||| || || | || || || | || Sbjct 171633 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGA 171574 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||| ||| ||| ||| |||||| |||| | ||||| | || || Sbjct 171573 ATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACC 171514 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | |||||||||||| ||||||||| Sbjct 171513 TCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATG 171466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334930932556535