Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq15 107 2e-18 >seq15 Length=4650977 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050 ||| || ||||| || ||||| ||||| | ||||| ||| ||||||| | || |||| Sbjct 564809 ACGCAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGG 564750 Query 25051 AGTCGTCTGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 || | ||||| || ||| ||| |||| |||| || || || || || || Sbjct 564749 AGCCCAGCGACACCATTGAGAACGTCA---AAGCCAAAATCCAG-GATAAGGAGGGCATC 564694 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 || |||||||| ||| || | || |||||||| || || | ||||||| ||||| || Sbjct 564693 CCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTG 564634 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || |||||||| |||||||||||||| || || Sbjct 564633 TCTGACTACAATATCCAAAAAGAATCCACCCTCCA 564599 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | ||||| ||| ||||||| | || |||||| | | Sbjct 569839 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCCAGT 569780 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| || || || || || || |||||||| Sbjct 569779 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 569720 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||||| ||||| || || ||||| Sbjct 569719 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 569660 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||||||||| || || Sbjct 569659 ATCCAGAAAGAATCCACACTCCA 569637 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | |||||||| | Sbjct 564345 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGC 564286 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| || || || || || || |||||||| Sbjct 564285 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 564226 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| ||||| || ||| ||||| Sbjct 564225 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 564166 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || |||||||| || || || Sbjct 564165 ATCCAGAAAGAATCTACCCTCCA 564143 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || | ||||| | ||||| ||| ||||||| | || | |||| | | Sbjct 569611 ATGCAGATCTTCGGCAAGACCCTCACCGGCAAAACCATCACCCTTGAGGGGGAGCCCAGT 569552 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| || || || || || || |||||||| Sbjct 569551 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 569492 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| ||||| || | ||||||| ||||| || || ||||| Sbjct 569491 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 569432 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||||||||| || || Sbjct 569431 ATCCAGAAAGAATCCACACTCCA 569409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433306954477775