Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq15 107 2e-18
>seq15
Length=4650977
Score = 107 bits (118), Expect = 2e-18
Identities = 154/215 (72%), Gaps = 8/215 (4%)
Strand=Plus/Minus
Query 24991 ACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGG 25050
||| || ||||| || ||||| ||||| | ||||| ||| ||||||| | || ||||
Sbjct 564809 ACGCAAACATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGG 564750
Query 25051 AGTCGTCTGACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106
|| | ||||| || ||| ||| |||| |||| || || || || || ||
Sbjct 564749 AGCCCAGCGACACCATTGAGAACGTCA---AAGCCAAAATCCAG-GATAAGGAGGGCATC 564694
Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166
|| |||||||| ||| || | || |||||||| || || | ||||||| ||||| ||
Sbjct 564693 CCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTG 564634
Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201
|| |||||||| |||||||||||||| || ||
Sbjct 564633 TCTGACTACAATATCCAAAAAGAATCCACCCTCCA 564599
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | ||||| ||| ||||||| | || |||||| | |
Sbjct 569839 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCCAGT 569780
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| || ||| || || || || || || ||||||||
Sbjct 569779 GACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 569720
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||| || || | ||||||| ||||| || || |||||
Sbjct 569719 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 569660
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || ||||||||||| || ||
Sbjct 569659 ATCCAGAAAGAATCCACACTCCA 569637
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | ||||| || ||||||| | |||||||| |
Sbjct 564345 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGC 564286
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| |||||| || || || || || || ||||||||
Sbjct 564285 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 564226
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | || |||| ||||| || ||| |||||
Sbjct 564225 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 564166
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || |||||||| || || ||
Sbjct 564165 ATCCAGAAAGAATCTACCCTCCA 564143
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || | ||||| | ||||| ||| ||||||| | || | |||| | |
Sbjct 569611 ATGCAGATCTTCGGCAAGACCCTCACCGGCAAAACCATCACCCTTGAGGGGGAGCCCAGT 569552
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| |||||| || || || || || || ||||||||
Sbjct 569551 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 569492
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| ||||| || | ||||||| ||||| || || |||||
Sbjct 569491 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 569432
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || ||||||||||| || ||
Sbjct 569431 ATCCAGAAAGAATCCACACTCCA 569409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433306954477775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |