Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq32 104 5e-17 seq302 93.3 9e-14 seq191 93.3 9e-14 seq39 93.3 9e-14 seq8 93.3 9e-14 seq339 91.5 3e-13 seq234 91.5 3e-13 seq150 91.5 3e-13 seq10 91.5 3e-13 seq392 89.7 1e-12 seq74 87.8 4e-12 seq46 86.0 1e-11 >seq32 Length=3524602 Score = 104 bits (114), Expect = 5e-17 Identities = 589/927 (64%), Gaps = 30/927 (3%) Strand=Plus/Minus Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 ||||| | ||| ||||| ||| | || || ||||| | || | |||||| |||| Sbjct 2635466 TACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCT 2635407 Query 293587 TCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 | | ||| ||||| ||||| | || || ||| ||| ||||||||||| | Sbjct 2635406 GCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 2635347 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAG---TCAAACGGCATCTT-CAGCTGGAAGAACACATC 293702 |||||| || | || || | | || ||||| || | || | ||| ||| |||| Sbjct 2635346 TTGAGCA-GCTGGGCT--TCGGGGCTTTCGAACGG-ATGTCGCATCAGGATGAAGGCATC 2635291 Query 293703 CTGCAGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTC 293762 ||||||||| || || | || | || | | ||||||||| |||||| || || Sbjct 2635290 GGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTC 2635231 Query 293763 GGGAACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTGAC 293822 ||| |||| || | | || ||| || ||| ||||| ||| || |||||| Sbjct 2635230 GGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGG- 2635172 Query 293823 ATGCTTGCGG--AGGTCCTCAAAGTCAAATGCA---TCATTCTTGACATAGTTCTTGAGC 293877 || | || || | || ||||| || | || | |||| || | ||||| Sbjct 2635171 -TGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGG 2635113 Query 293878 ACGATGCTACCGATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCA 293937 ||||| | | | || || || ||| ||||| ||||||||| || | ||| Sbjct 2635112 GCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCT 2635053 Query 293938 GCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACA 293997 | |||||||| |||| |||||||||||| || ||| || |||| ||| | Sbjct 2635052 GTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAA 2634993 Query 293998 CTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTC 294057 ||| |||| ||| | || ||| | || ||||| |||| | || |||| || | Sbjct 2634992 GCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTAC 2634933 Query 294058 CAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAA 294117 |||| | | ||||||||||| | ||| || |||| || |||||| ||||||| Sbjct 2634932 CAGAGCTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAG 2634873 Query 294118 AGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-AG 294176 |||| ||| | |||| || | || ||| || || |||||| ||| || | Sbjct 2634872 AGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCG-CTGGGACACAT 2634814 Query 294177 TAGAGACCA---CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACAT 294233 | ||||| |||| | ||||||| | ||||||||| || || || ||||| Sbjct 2634813 CAAGGACCAGTCCTGG---TTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAA 2634757 Query 294234 TGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCT-TGAT-TACGACGGAGGAGC 294291 ||||| || | || | ||| | | | ||||| ||| || | | | | || | Sbjct 2634756 GGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTC--AGCTCC 2634699 Query 294292 AGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCC---CTTC 294348 |||||||| | | |||| || |||||||| |||| || |||| ||| || Sbjct 2634698 AGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTC 2634639 Query 294349 CTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACG 294408 || || ||||||| | ||||| || ||| ||| | || ||||||| || || Sbjct 2634638 TTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACC 2634579 Query 294409 ATGCCATCGGACTCACCATTGGTTCCG 294435 | || | ||| | || ||||| ||| Sbjct 2634578 AATCCGTTGGAGTTGCCGTTGGTGCCG 2634552 >seq302 Length=968941 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 230040 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 229981 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 229980 GCCCCACGTTGGGC 229967 >seq191 Length=1256563 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 839565 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 839506 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 839505 GCCCCACGTTGGGC 839492 >seq39 Length=3324142 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 436445 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 436386 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 436385 CCCCACGTTGGGCGGA 436370 >seq8 Length=5572511 Score = 93.3 bits (102), Expect = 9e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2707859 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2707800 Query 142563 CCCCACATCGGGCAGAAGT 142581 |||||| | |||| |||| Sbjct 2707799 CCCCACGTTGGGCGCAAGT 2707781 >seq339 Length=691795 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 95343 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 95284 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 95283 CCCCACGTTGGGC 95271 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 104091 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 104032 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 104031 CCCCACGTTGGGC 104019 >seq234 Length=1038444 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 66425 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 66366 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 66365 CCCCACGTTGGGC 66353 >seq150 Length=1588068 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 991299 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 991240 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 991239 CCCCACGTTGGGC 991227 >seq10 Length=5440583 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1891528 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1891469 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1891468 CCCCACGTTGGGC 1891456 >seq392 Length=529284 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 132880 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 132939 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 132940 CCCACGTTGGGC 132951 >seq74 Length=2468174 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 352519 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 352577 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 352578 TCGAGTCCCGGCAGAGA 352594 >seq46 Length=2996542 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 1830791 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 1830732 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 1830731 TCCCGGCAGAGA 1830720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027784320901385