Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq32 672 0.0 seq146 113 9e-20 seq169 105 1e-17 seq22 100 5e-16 >seq32 Length=3524602 Score = 672 bits (744), Expect = 0.0 Identities = 1118/1597 (70%), Gaps = 50/1597 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| |||| |||| | | ||| | |||||||||||||| ||||||| Sbjct 2635757 GATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCC---GCGCTCC 2635701 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||||| ||| || | ||| |||||||| |||||||| | ||| Sbjct 2635700 GTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGG 2635641 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || || ||||||| ||| |||||||||| ||||| || ||| Sbjct 2635640 GTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 2635581 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 ||| || |||||||||| || |||||| ||||||||||||||||| | ||| Sbjct 2635580 GACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTC 2635521 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | | |||| || || |||||||| Sbjct 2635520 TCCTTCAGCAGCTTCCAGTCCCACAGGTC-----GGTCGGCGTCTTCT----CCCACATG 2635470 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | ||||| |||||||| ||||||||| ||| |||||| ||| | Sbjct 2635469 TCGTACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGA-G 2635411 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | ||| ||| || | ||||| | || |||||||||| ||||||||||||||||||| Sbjct 2635410 CTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTG 2635351 Query 244426 CTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGATGCC-CATCATCATGAAGACG 244483 |||| | | || || ||| | || ||| || ||| | ||||| |||||| | Sbjct 2635350 GATGTTGA-GCAGCTGGGCTTCGGGGCTTTCGAACGG-ATGTCGCATCAGGATGAAGGCA 2635293 Query 244484 TCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT 244543 |||||||| ||||| |||||||| ||||| || ||||| ||||||||||| | |||| Sbjct 2635292 TCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCT 2635233 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGG 244603 ||||| || ||||| | ||| |||||| | |||||||||||| ||| | | Sbjct 2635232 TCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTG 2635173 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 |||| ||||||| || |||||| | || || || ||| | | Sbjct 2635172 GTGACGGAGGCCAGCTTCTTGAAGTCGAA-----AG------TCCGCTCTGGCG----TG 2635128 Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 || || ||||||||||| | |||||||||||||||||||||||| ||| | ||||| Sbjct 2635127 ACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTG 2635068 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| || | ||| ||||||||||| ||||| |||||||||||||||| ||| || ||| Sbjct 2635067 TACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTG 2635008 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| |||||| |||||||||||||||||| ||||| |||||| ||| ||||| Sbjct 2635007 CTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGAC 2634948 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 ||| || | || |||||| | | ||||| ||| ||| || | || || | Sbjct 2634947 TCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTCCTTC 2634888 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 || || | |||||| || ||||||||| |||||| |||||| || ||||| ||| Sbjct 2634887 TCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACAC 2634828 Query 244964 GACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTC 245022 ||| ||| ||||| | ||| || | | || || |||| |||||| ||||| Sbjct 2634827 -TCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTC 2634769 Query 245023 GGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTT 245082 |||||||| | ||| | ||| ||||| |||| |||||||| ||| || |||||||| Sbjct 2634768 CGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTT 2634709 Query 245083 CCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGC 245142 | ||||||||| ||||| || ||||||| |||||| || |||| ||| | |||| ||| Sbjct 2634708 CTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGC 2634649 Query 245143 GCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGC 245198 ||||| | ||||||||| |||||||| | | | ||||| |||| | | | Sbjct 2634648 CCCGGGTCTCTTGTTGCCGCCCTGGTCGA----CGTAGCGAGCCGTGTTGTTGTAAACTC 2634593 Query 245199 GCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGC 245258 ||| | || || | ||||| |||| |||||||||||| |||||| ||| | Sbjct 2634592 TCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCG 2634533 Query 245259 CCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGC 245318 | || | ||| | | || ||| | || || ||| |||||| ||||| ||||| Sbjct 2634532 ATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACT 2634473 Query 245319 TCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGG 245378 ||| | |||||| ||||| || |||||||| ||||||| ||||||| |||||| Sbjct 2634472 GCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGC 2634413 Query 245379 AGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGT 245438 ||||||||| ||| | | | | | |||||| || || || ||||||||| || Sbjct 2634412 TGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACC 2634353 Query 245439 AGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCG-CCGTGGAT 245496 | | || ||| |||| ||| |||| || |||||| ||| | ||| |||||||| Sbjct 2634352 A-CTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGTCAATG-TCTCGCCCGTGGAT 2634295 Query 245497 CTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCTT 245556 | | | ||||||||| ||||||| ||| |||| | | || ||| Sbjct 2634294 CCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATCTT 2634235 Query 245557 GAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 |||| |||||||||||| || |||||||| || ||| Sbjct 2634234 CAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACCGAAG 2634198 >seq146 Length=1599760 Score = 113 bits (124), Expect = 9e-20 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 244705 CACCTCCTC-CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 |||||| || | | ||| |||| | ||| ||||| |||||||| || ||| ||||||||| Sbjct 271714 CACCTCATCTCTACTTG-TGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGG 271772 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||| | || || |||| ||| ||||||||||||||||||||||||| | ||| Sbjct 271773 TGCCCAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCG 271832 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 || ||||| ||| | ||| || | || |||||| | | |||||| ||| Sbjct 271833 TACCCGTCTCTGTCTGCGACTCGATGATGGCGTACCAGAGCTGCTGAGCCTTCACC 271888 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||| |||||||| || ||||| | ||| ||| ||||| |||| |||||||| || Sbjct 272192 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 272251 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||||||||||||| ||||| ||||| | ||||| ||||||| Sbjct 272252 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 272311 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||| |||| || ||| || || Sbjct 272312 GTACACAGAGAAGGCCCCTGG 272332 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||| | |||||| || || ||| ||| Sbjct 270081 ACCTGAAACTCTCCTGAGAGCACCCTGCGAGTGTAAAAGTTGCTTGTGTACGCCTCAATG 270140 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || ||||| || | | |||||| Sbjct 270141 GACTCATTGTTACCCAGGATCTGGGCAGTGGAAGCTGTGGGCATCGGGGCTAAAAGCAGA 270200 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||| || |||||||| Sbjct 270201 CTGTTCCTTACACCGTGCCT 270220 >seq169 Length=1474717 Score = 105 bits (116), Expect = 1e-17 Identities = 107/137 (78%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| | ||||| ||||| ||||||||||| || | |||||| Sbjct 1314716 GGAGAGAGAGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCC 1314775 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| ||| ||| | |||||| || || |||||| ||||| || Sbjct 1314776 GCCATCTTCTGGCTGAAGAAGAGAGGCCT-GATGCCTGGCCTAACCTTCAGCAACGAGCT 1314834 Query 42815 CATCAGCAGGGACGAGG 42831 |||||| | ||||||| Sbjct 1314835 CATCAGTCGAGACGAGG 1314851 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/126 (75%), Gaps = 6/126 (5%) Strand=Plus/Plus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| | | ||||||||| ||||| | || ||||||||||||||||| ||||| Sbjct 1314347 TTCACGCAGGAGGTGCAGGTGACAGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCCATG 1314406 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||| | ||||||||| |||| || ||||||| |||| |||||| ||||||| Sbjct 1314407 GAGAACATCCACTCTGAGATGTA---CAGCCTGCTCATCGACACCTACATCAAGGATCCC 1314463 Query 42594 GTCGAG 42599 |||| Sbjct 1314464 AGCGAG 1314469 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 1315631 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 1315690 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 1315691 GGTCGGGGAGTACCAG 1315706 >seq22 Length=4020106 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || || | || || ||||| ||||||||||| ||| | ||||| Sbjct 3875833 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCT 3875892 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | |||| |||||| ||| ||| ||| || ||||| || || |||| ||| |||||||| Sbjct 3875893 GCTATCTACTGGCTGAAGAAGAGAGGCCTC-ATGCCAGGCCTTACCTACTCCAACGAACT 3875951 Query 42815 CATCAGCAGGGACGAGG 42831 ||| ||||||||||||| Sbjct 3875952 CATTAGCAGGGACGAGG 3875968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944292160103600