Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq15 140 8e-28 seq292 120 7e-22 >seq15 Length=4650977 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||||| || ||||| || || || | || || || || || Sbjct 564154 TTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAA 564213 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| || | ||||| || || |||||||||||||| || || ||||| Sbjct 564214 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTT 564273 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||| | ||| ||||| || ||||| ||||| ||||| || |||||||| Sbjct 564274 CTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 564333 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 564334 GAAGATCTGCAT 564345 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | || || || || | ||| ||||||||||||||| |||| Sbjct 564571 CATG-CCACCCCTCAGACGGAGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGT 564629 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || ||||| || |||||||| | ||| || | Sbjct 564630 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAG 564689 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || |||||||||||||| ||||| ||||| || || | ||||| | | Sbjct 564690 GGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCT 564749 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| || || ||||| || |||||||| || |||||||| Sbjct 564750 CCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 564801 Score = 131 bits (144), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || || |||| ||| || || ||||| || |||| Sbjct 564343 CATG-CCACCCCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGT 564401 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || ||||| || |||||||| | ||| || | Sbjct 564402 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAG 564461 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || || ||||| || || | ||||| | | Sbjct 564462 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCT 564521 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 564522 CAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564573 Score = 118 bits (130), Expect = 3e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 288291 GATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACG 288350 ||| || ||||| | || ||||| || ||||| | || || || || |||||||| | Sbjct 569201 GATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCT 569260 Query 288351 CTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGA 288410 ||| || | ||||| || || |||||||||||||| ||||| ||||| || || | Sbjct 569261 CTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGT 569320 Query 288411 ATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 || || | || ||||| || ||||| ||||| || || || ||||||||||| ||||| Sbjct 569321 GTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 569380 Query 288471 CAT 288473 ||| Sbjct 569381 CAT 569383 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || || || | ||| |||||| ||||| || |||| Sbjct 569381 CATG-CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGT 569439 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || || || || |||||||| | ||| || | Sbjct 569440 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAG 569499 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || |||||||||||||| || || ||||| || || | || || | | Sbjct 569500 GGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCT 569559 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | | || || ||||| || || ||||| || |||||| |||| |||||||| Sbjct 569560 CCCCCTCAAGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || || || | ||| |||||| ||||| || |||| Sbjct 569609 CATG-CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGT 569667 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| || ||||| | || ||||| || |||||||| | ||| || | Sbjct 569668 CAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAG 569727 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || || || || || || || | || || | | Sbjct 569728 GGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCT 569787 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| || || ||||| || || || || || |||||||| Sbjct 569788 CCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 569839 >seq292 Length=796020 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | ||||| || || ||| Sbjct 171657 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 171598 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | || || |||||||||||||| || || || |||||||| Sbjct 171597 ATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 171538 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| |||||||| || || || || ||| Sbjct 171537 TCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACG 171478 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 171477 AAAATCTGCAT 171467 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | ||||| || || ||| Sbjct 171429 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAG 171370 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || |||||||||||||| || || || |||||||| Sbjct 171369 ATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTC 171310 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || || || |||||||| || ||||| || ||| Sbjct 171309 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACG 171250 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 171249 AAAATCTGCAT 171239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179594169426830