Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq15 125 8e-24 seq380 98.7 1e-15 seq428 95.1 1e-14 seq302 93.3 5e-14 seq763 89.7 6e-13 seq176 89.7 6e-13 >seq15 Length=4650977 Score = 125 bits (138), Expect = 8e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| |||||||| |||| ||| || || | || || |||||||| || || || Sbjct 564611 TCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 564670 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || | ||||||||| | || | || |||||| ||| |||||| ||||| || Sbjct 564671 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTC 564730 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||||| | ||||| || | |||||||||||||| || || ||||| ||| Sbjct 564731 TCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACA 564790 Query 42198 AAGATTTGCATTTT 42211 ||||| ||||| || Sbjct 564791 AAGATCTGCATGTT 564804 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||| || | |||| || || || || ||||| |||| | Sbjct 569385 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 569444 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| ||||| || || || | ||||||||| | || Sbjct 569445 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 569504 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| |||||| |||| || | | ||||| || | ||| | Sbjct 569505 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCC 569564 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || || ||||| | ||||| ||||| Sbjct 569565 TCAAGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||| || | |||| || || || || ||||| |||| | Sbjct 569613 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 569672 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| || || || || || | ||||||||| | || Sbjct 569673 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 569732 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| ||| || || | || | | ||||| || | ||||| Sbjct 569733 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACC 569792 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||||||||| || || || || |||||||| ||||| || Sbjct 569793 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 569842 >seq380 Length=662588 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||||||||| || | | |||||||||| ||||||||||||||||||||| |||||||| Sbjct 548190 ATTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 548249 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 548250 CACTATACTAACGAGGA 548266 >seq428 Length=446940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 74/88 (84%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 56994 TATGAAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 ||||||||| || |||| || | | |||||||||| |||||||||||||||||||| Sbjct 276978 TATGAAAAAGTTGTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 276919 Query 57051 GACATACTCACCACTATACTACCGAGGA 57078 | |||||||||||||||||| |||||| Sbjct 276918 GGGATACTCACCACTATACTAACGAGGA 276891 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 410253 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 410194 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 410193 TACTAACGAGGAGTGA 410178 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 306066 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 306007 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 306006 TACTAACGAGGAATG 305992 >seq302 Length=968941 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 207958 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 207899 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 207898 TATACTAACGAGGA 207885 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 229527 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 229468 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 229467 CTATACTAACGAGGA 229453 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 226301 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 226360 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 226361 TATACTAACGAGGA 226374 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 228890 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 228831 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 228830 TACTAACGAGGA 228819 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 214080 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 214021 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 214020 TACTAACGAGGA 214009 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 226730 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 226789 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 226790 TACTAACGAGGA 226801 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 228155 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 228096 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 228095 TACTAACGAGGA 228084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||| |||||| ||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 209085 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 209027 >seq763 Length=119288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 13128 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 13069 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 13068 TACTAACGAGGA 13057 >seq176 Length=1459804 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 269952 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 269893 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 269892 TACTAACGAGGA 269881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543185741212400