Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq32 197 1e-45 seq15 109 5e-19 seq146 95.1 1e-14 seq292 87.8 2e-12 >seq32 Length=3524602 Score = 197 bits (218), Expect = 1e-45 Identities = 516/772 (67%), Gaps = 20/772 (3%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| |||||| ||| | ||||||| | ||| ||||| |||| || || | | Sbjct 2635697 AGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTG 2635638 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| ||| ||||| ||||||||||| || || ||||| || || | Sbjct 2635637 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 2635578 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 || || |||||| ||||| ||||| ||| |||||||||||| | ||||| ||| Sbjct 2635577 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 2635518 Query 146224 C---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAA 146280 | || || ||| | ||||| | || || || | | | ||||||| Sbjct 2635517 TTCAGCAGCTT---CCAGTCCCACA---GGTCGGTCGGCGTCTTCTCCCACATGTCGTAC 2635464 Query 146281 TGCATAGTGCCGCGGAACAGGGGGCTATTC-TCGTACGATTCATAAGGACCGTCGATCTT 146339 || | |||| | | |||| | | ||||| | || || || ||| | ||| Sbjct 2635463 TGGAGGATGCC-CTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGA-GCTCTG 2635406 Query 146340 -GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGT 146398 ||| ||||||||||| || ||||| || | ||| |||||||| |||| | || Sbjct 2635405 CGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 2635346 Query 146399 TGACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGC 146456 ||| || |||| || | | || ||| | || || ||| | || | ||||| ||||| Sbjct 2635345 TGA-GCAGCTGGGCTTCGGGGCTTTCGAACGG-ATGTCGCATCAGGATGAAGGCATCGGC 2635288 Query 146457 GAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGC 146516 |||||||| | |||| || | || | ||| |||||| || | || | | Sbjct 2635287 CAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGACGTCTCGGCTTCGGG 2635228 Query 146517 AGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAA 146576 || |||| ||| ||||||||||||||||||| || ||||| | || || | Sbjct 2635227 GACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGAC 2635168 Query 146577 ACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGC 146636 |||| |||| || || | | | ||| |||| || |||||| ||| Sbjct 2635167 GGAGGCCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGC 2635111 Query 146637 GATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGC 146696 ||| ||||||| ||| || ||||| |||||||||| | |||| ||| | ||| | Sbjct 2635110 GATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGT 2635051 Query 146697 GCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGG 146756 ||||||||||||||| |||||| |||||| || | ||||| || | ||||||| | Sbjct 2635050 GCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGC 2634991 Query 146757 GTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 |||||||||||||||||| || |||||||||| | || ||||| |||| Sbjct 2634990 GTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATG 2634939 >seq15 Length=4650977 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| |||||||| || || ||||| ||| || ||||| ||||| Sbjct 564605 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 564664 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| |||||| ||| Sbjct 564665 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 564724 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | ||||||||||| || || Sbjct 564725 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 564784 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 564785 TTGACAAAGATCTGCATG 564802 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| || || ||||| ||| || ||||| ||| || ||||| || || Sbjct 564149 GTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 564208 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| |||||| |||| Sbjct 564209 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 564268 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || ||||| | ||| | || |||||||| || || Sbjct 564269 ACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 564328 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 564329 TTGACGAAGATCTGCATG 564346 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||| || || ||||| ||| || ||||| ||||| Sbjct 569643 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 569702 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || ||| Sbjct 569703 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 569762 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | ||||||||||| || ||| Sbjct 569763 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTT 569822 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 569823 TTCACAAAGATCTGCAT 569839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| ||||| Sbjct 564377 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 564436 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || |||| Sbjct 564437 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 564496 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || || | ||| | || |||||||| || || Sbjct 564497 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 564556 Query 127097 TTTACAAAAATCTGCATG 127114 || || || ||||||||| Sbjct 564557 TTGACGAAGATCTGCATG 564574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||| || || ||||| || || ||||| ||| || ||||| || ||| Sbjct 569415 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 569474 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| |||||| |||| Sbjct 569475 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTG 569534 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| | || | ||| | ||||||||||| || || Sbjct 569535 ACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGTTTTGCCGGTGAGGGTC 569594 Query 127097 TTTACAAAAATCTGCATG 127114 || | || ||||||||| Sbjct 569595 TTGCCGAAGATCTGCATG 569612 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 126932 ATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGC 126991 || ||||| || || ||||| ||| || ||||| || ||||| |||||| | | Sbjct 569202 ATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 569261 Query 126992 TGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTG 127051 ||||| || || || ||||||||||| ||| |||||| |||| | || | |||| Sbjct 569262 TGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTG 569321 Query 127052 TCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGC 127111 || | ||| ||||| | ||| | || ||||| || || || || || || |||||| Sbjct 569322 TCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGC 569381 Query 127112 ATG 127114 ||| Sbjct 569382 ATG 569384 >seq146 Length=1599760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745 || ||||| | |||||| |||||| |||||||| |||||| ||||| ||||| | | Sbjct 271739 ACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTC 271798 Query 146746 TTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||||||| ||||||||||||||||||||| Sbjct 271799 CTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 271830 >seq292 Length=796020 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || ||||| || || || ||||| || || ||||| ||| || Sbjct 171676 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 171617 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| ||||| |||||| || |||||| || ||||| ||||| || || ||| | Sbjct 171616 CAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-T 171558 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || | | ||| || | | || | ||| || | ||| || || | ||| | || | Sbjct 171557 GAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCT 171498 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 | || || || ||||| || |||||||||||| || Sbjct 171497 TCCCAGTGAGGGTTTTCACGAAAATCTGCATGCCT 171463 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || ||||| || || || ||||| || || ||||| ||| || Sbjct 171448 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 171389 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 |||||||| ||||| |||| | | |||||| || ||||| ||||| || || ||| | Sbjct 171388 CAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-T 171330 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || | | ||| || | | || | |||||| | ||| || || | ||| | || | Sbjct 171329 GAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCT 171270 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || |||||||| || ||||||||||| Sbjct 171269 TCCCAGTGAGAGTTTTCACGAAAATCTGCAT 171239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475477114116400