Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq32 187 2e-42 seq146 95.1 1e-14 seq15 87.8 2e-12 seq292 82.4 7e-11 >seq32 Length=3524602 Score = 187 bits (206), Expect = 2e-42 Identities = 892/1400 (64%), Gaps = 36/1400 (3%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | ||||| || Sbjct 2634247 AAAGTGGCCGAGCGGCCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGA 2634306 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 ||||| || || | ||| || ||| | | |||| | || | ||||| ||||| Sbjct 2634307 GACATTGACGCTGCCATCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCC 2634366 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| |||||| || || ||| ||| |||| || || ||||| Sbjct 2634367 TCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTC 2634426 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 ||| || || ||||||||| || ||||| || || || | |||||| | ||| Sbjct 2634427 ACCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATT 2634486 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196 ||||| | | || || || |||||| ||| | | | || | || |||||| Sbjct 2634487 TCCAAGTCCGCTGGGGGGATCGGCGTGGCGGTGAGCTGCATCCGATCGACG-GGAAGCTA 2634545 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 ||| ||||| |||| | | || ||| | | | |||||| |||||||||| || Sbjct 2634546 CATTGCCGGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAA 2634605 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCT 123313 | | | || ||||||||||||||||||| | | || || | || || || || Sbjct 2634606 CACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCT 2634665 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373 |||||||||||| | || |||| ||| || | | | || |||| || ||| Sbjct 2634666 GGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 2634725 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || ||| |||| | || | || ||||| || ||| | || || |||| ||| | Sbjct 2634726 GGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAG 2634785 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCG 123492 || | | || | ||||| | ||||||||| | || ||||||||| || || Sbjct 2634786 AGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC-AGCGAGTGTCCCGGGCTGGACG 2634844 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----A 123547 | | || | |||| || || | ||| | ||| ||| ||||| | | Sbjct 2634845 AGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGA 2634904 Query 123548 ACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 | ||| | || | | | ||| | | || | | || ||||| | || ||| Sbjct 2634905 AGAGGGTGGTGAAGGCGCAGCA---GCTCTGGT--ACGCCATCATCGAGTCCCAGACCGA 2634959 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 |||||| ||||| |||||||||||||| ||||| ||||||||||| | ||| ||| || Sbjct 2634960 AACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAA 2635019 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA---GCGATGC 123724 | |||| || || ||||| || || || ||| | || | | || |||| || | | Sbjct 2635020 CCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGA 2635079 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCG----AAA 123780 ||| |||||||| || || |||| || || | | || | |||| | | Sbjct 2635080 CGAG---GTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGA 2635136 Query 123781 ACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 ||| |||| | ||| | | ||| | | || || | || || || | | Sbjct 2635137 GCGGA-CTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCA 2635195 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 |||| || ||||| | |||| || || | ||||| ||| || | | Sbjct 2635196 ACAAGATCATCGACATCAATTACTACCCGGTCCCCGAAGCCGAGACGTCCAACAAGCGCC 2635255 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCG-CATG 123959 |||| ||| |||| | ||| | || || ||||||| || || | || |||| ||| Sbjct 2635256 ACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACAT- 2635314 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 |||| ||||||| |||||| || |||| || | || || ||| || || || || Sbjct 2635315 CCGTTCGAAAGCCCCGAAGCCCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCAC 2635374 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 | ||| ||||||| ||||||||||| || | | |||| | ||||| | |||| | Sbjct 2635375 GCCGCCCTGGAGGCCAGCTGCGAACTCGCCGCAGAGCTCGGCCCCTACGAGACATACGAG 2635434 Query 124080 GGC-AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138 ||| ||||| | || || || | ||||||||||||||| | || ||||| | Sbjct 2635435 GGCTCGCCCGTC-AGTAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCGACCGA 2635493 Query 124139 TTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCG 124196 |||||||||||| | | || | | | |||| | ||||| || | ||| Sbjct 2635494 CCTGTGGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACACGGCGTGAGGAACAGC 2635551 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| || ||||| |||||| ||||| |||| || || || | || |||||||| ||| Sbjct 2635552 CTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCC 2635611 Query 124257 TTCGAGCCGTTCACTAACAA 124276 ||||| ||| ||| | ||| Sbjct 2635612 ATCGAGGCGTACACCAGCAA 2635631 >seq146 Length=1599760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 271842 GAGACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 271783 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || || | || ||||| ||| | || || ||||||||| Sbjct 271782 AATCTGGGCACCATCAAGTCCAGCAATCTCTGCACAGAGATCGTCGAATACA 271731 >seq15 Length=4650977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || ||||| ||||||||||| || || | ||| ||| ||| Sbjct 564593 ACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 564652 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | |||| | |||||||| || || ||||| || ||||| || Sbjct 564653 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 564712 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||||| || | || | ||||||| | ||| || || || || | ||||| Sbjct 564713 ATTTTGGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTT 564771 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || ||||| || ||||| Sbjct 564772 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 564801 >seq292 Length=796020 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || || | ||| ||| || Sbjct 171448 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTC 171389 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || ||||| || || | || | | |||||||| || ||||||||||||||||| || Sbjct 171388 CAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTG 171329 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| ||| || | || | || | |||||| | ||| || || || |||| || | Sbjct 171328 AATCTTTGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCT 171270 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || |||||||| || ||||| |||||| Sbjct 171269 TCCCAGTGAGAGTTTTCACGAAAATCTGCATC 171238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451980684590600