Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq39 127 3e-24 seq283 107 3e-18 seq93 96.9 5e-15 >seq39 Length=3324142 Score = 127 bits (140), Expect = 3e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || || || || ||||||||||| ||||||||| | Sbjct 2726879 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 2726820 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| | Sbjct 2726819 GGCGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 2726760 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || || ||||| || || || || || || | | ||| | |||||| Sbjct 2726759 ATCGTCTCCCCAAAAATGGCGTTCGGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGC 2726700 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| |||||||| || || || |||||| ||| || || || || || ||| Sbjct 2726699 TCCACAGCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCT 2726640 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | ||| || |||||||| ||||| ||||| || | | || Sbjct 2724358 TCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGAGTG 2724299 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || |||||||| || ||| | ||||||||||| ||||| ||||| || |||||| Sbjct 2724298 TAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAAGTA 2724239 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537 || |||||||||||||| | ||| | |||| Sbjct 2724238 GGAGGACTGTCAATCATATGGGATCGTGCTA 2724208 >seq283 Length=827976 Score = 107 bits (118), Expect = 3e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 ||||||||||| || || || | || ||||| |||||||| |||||||| | |||||| Sbjct 67818 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 67759 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 || ||| ||| ||| ||| ||||| | |||||| ||||| |||| || | ||||| Sbjct 67758 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 67699 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || ||||| || | || || || | || || | | || || | ||| | ||| | | Sbjct 67698 TCTCCGAATATAGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 67639 Query 9122 GCCTCGACGTCGCCATAGA 9140 || |||| || ||||||| Sbjct 67638 GCGTCGATATCCCCATAGA 67620 >seq93 Length=2237016 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| | ||||| || || || || |||||||||||||| ||||||||| | || Sbjct 504067 GTTTTGATGATGTTGAAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGA 504126 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||| |||| ||| | | || ||||||| ||| || || || |||| ||| | ||| Sbjct 504127 GAGTTGATGGGATTCCCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATG 504186 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 ||||| ||||| |||| ||| || | ||| || | |||| ||||| || | || Sbjct 504187 CTCTCTCCGAATATGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCC 504246 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | || || | ||| |||||||| Sbjct 504247 AGGGCGTCAATGTCACCATAGAG 504269 Score = 87.8 bits (96), Expect = 3e-12 Identities = 164/240 (68%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||||||| || | ||||| || || | |||||||||| |||| ||| ||||| | Sbjct 510723 TAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCACCCT 510782 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | || || |||| |||||| || |||||||| |||||||||||||| | | | Sbjct 510783 TCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTGAGGC 510842 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCA---CTT 9898 | || || | || |||||||| | || | || | ||| | ||| | || | ||| Sbjct 510843 CTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGCTGCTCAGCAGGGAAACCTT 510902 Query 9899 CGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGT 9958 | || |||| ||| | ||| || ||| | |||||| || ||||| || |||| Sbjct 510903 CAGG---GTACACCATGTCCACTGGGACCTCAGATATGGTGGGAGGGTACATCTCCCCGT 510959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723691949299000