Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq39 127 3e-24
seq283 107 3e-18
seq93 96.9 5e-15
>seq39
Length=3324142
Score = 127 bits (140), Expect = 3e-24
Identities = 172/240 (72%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
||||| || |||||||| || || || || || ||||||||||| ||||||||| |
Sbjct 2726879 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 2726820
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|| ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| |
Sbjct 2726819 GGCGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 2726760
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
|| |||| || || ||||| || || || || || || | | ||| | ||||||
Sbjct 2726759 ATCGTCTCCCCAAAAATGGCGTTCGGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGC 2726700
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| ||||| |||||||| || || || |||||| ||| || || || || || |||
Sbjct 2726699 TCCACAGCGTCGACGTCACCGTACAGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCT 2726640
Score = 87.8 bits (96), Expect = 3e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
|||||| || || | ||| || |||||||| ||||| ||||| || | | ||
Sbjct 2724358 TCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGAGTG 2724299
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| |||||||| || ||| | ||||||||||| ||||| ||||| || ||||||
Sbjct 2724298 TAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAAGTA 2724239
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537
|| |||||||||||||| | ||| | ||||
Sbjct 2724238 GGAGGACTGTCAATCATATGGGATCGTGCTA 2724208
>seq283
Length=827976
Score = 107 bits (118), Expect = 3e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001
||||||||||| || || || | || ||||| |||||||| |||||||| | ||||||
Sbjct 67818 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 67759
Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061
|| ||| ||| ||| ||| ||||| | |||||| ||||| |||| || | |||||
Sbjct 67758 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 67699
Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121
|| ||||| || | || || || | || || | | || || | ||| | ||| | |
Sbjct 67698 TCTCCGAATATAGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 67639
Query 9122 GCCTCGACGTCGCCATAGA 9140
|| |||| || |||||||
Sbjct 67638 GCGTCGATATCCCCATAGA 67620
>seq93
Length=2237016
Score = 96.9 bits (106), Expect = 5e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998
||||| | ||||| || || || || |||||||||||||| ||||||||| | ||
Sbjct 504067 GTTTTGATGATGTTGAAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGA 504126
Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058
||| |||| ||| | | || ||||||| ||| || || || |||| ||| | |||
Sbjct 504127 GAGTTGATGGGATTCCCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATG 504186
Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118
||||| ||||| |||| ||| || | ||| || | |||| ||||| || | ||
Sbjct 504187 CTCTCTCCGAATATGGAGTTGGGGCGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCC 504246
Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141
| || || | ||| ||||||||
Sbjct 504247 AGGGCGTCAATGTCACCATAGAG 504269
Score = 87.8 bits (96), Expect = 3e-12
Identities = 164/240 (68%), Gaps = 6/240 (3%)
Strand=Plus/Plus
Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781
||||||| || | ||||| || || | |||||||||| |||| ||| ||||| |
Sbjct 510723 TAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCACCCT 510782
Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841
| || | || || |||| |||||| || |||||||| |||||||||||||| | | |
Sbjct 510783 TCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTGAGGC 510842
Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCA---CTT 9898
| || || | || |||||||| | || | || | ||| | ||| | || | |||
Sbjct 510843 CTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGCTGCTCAGCAGGGAAACCTT 510902
Query 9899 CGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGT 9958
| || |||| ||| | ||| || ||| | |||||| || ||||| || ||||
Sbjct 510903 CAGG---GTACACCATGTCCACTGGGACCTCAGATATGGTGGGAGGGTACATCTCCCCGT 510959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723691949299000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |