Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq292 154 3e-32
seq15 131 4e-25
>seq292
Length=796020
Score = 154 bits (170), Expect = 3e-32
Identities = 162/212 (76%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| || | || || | ||||||||
Sbjct 171447 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCC 171388
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| ||||| || ||||| || | || ||||| ||||||||||||||||| || |||
Sbjct 171387 AGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGA 171328
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| ||| ||| ||||||||||||||||| ||| ||||| || ||||||| |||
Sbjct 171327 ATCTTTGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTAATGGTC 171271
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | |||||| ||||| | |||||
Sbjct 171270 TTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 171239
Score = 140 bits (154), Expect = 7e-28
Identities = 159/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| || | || || | ||||||||
Sbjct 171675 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCC 171616
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || ||||| |||| || ||||| ||||||||||||||||| || |||
Sbjct 171615 AGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGA 171556
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| ||| ||| |||||||||||||| || ||| ||||| || ||||| | |||
Sbjct 171555 ATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTC 171499
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | ||||| ||||| | |||||
Sbjct 171498 TTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 171467
>seq15
Length=4650977
Score = 131 bits (144), Expect = 4e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||||||||| || || || ||||| || || ||||| |||| || || | ||||| ||
Sbjct 564136 AACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 564195
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||||| || || ||||| || | || ||||| || || ||||| || || || ||
Sbjct 564196 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTG 564255
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||||| ||||||||||||||||||||| ||||||||| ||||| | |||||
Sbjct 564256 GATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTT 564315
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 564316 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 564345
Score = 120 bits (132), Expect = 7e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || ||||| |||||||| |||||||| || | || || | ||||||||
Sbjct 564593 ACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCC 564652
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || || ||||| || || || ||
Sbjct 564653 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 564712
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
||||| ||||||||||||||||||||
Sbjct 564713 ATTTTGGCTTTGACGTTCTCAATGGTGTC 564741
Score = 116 bits (128), Expect = 8e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| |||||||| || || || ||||| || | || || | ||||||||
Sbjct 564365 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 564424
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || || ||||| || || || ||
Sbjct 564425 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 564484
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||||||||||||||| || || || ||||| | |||||
Sbjct 564485 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 564544
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 564545 CCGGTGAGGGTCTTGACGAAGATCTGCAT 564573
Score = 113 bits (124), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||| ||||| || || ||||| || | || || | ||||||||
Sbjct 569403 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 569462
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || || ||||| || || || ||
Sbjct 569463 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 569522
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
||||| ||||||||||||||||||||| ||| ||| | |||||||| | ||
Sbjct 569523 ATTTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCCCCTCAAGGGTGATGGTT 569579
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | || || |||| | |||||
Sbjct 569580 TTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611
Score = 109 bits (120), Expect = 1e-18
Identities = 152/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||| ||||| || || ||||| || | || || | ||||||||
Sbjct 569631 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 569690
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || || ||||| || || || ||
Sbjct 569691 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 569750
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| ||||| |||||||| | ||
Sbjct 569751 ATCTTGGCCTTAACATTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATGGTT 569807
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | ||||| || || | |||||
Sbjct 569808 TTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 569839
Score = 96.9 bits (106), Expect = 8e-15
Identities = 133/185 (72%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018
|| ||||| || | || || | |||||||| |||||||| || || ||||| || |
Sbjct 569202 ATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 569261
Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078
|| ||||| || || ||||| || || || || ||||| ||||||||||||||||||
Sbjct 569262 TGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTG 569321
Query 195079 TCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135
|| ||| || ||||| ||||| | ||||| || || | || || ||||| |
Sbjct 569322 TC---ACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGATC 569378
Query 195136 TGCAT 195140
|||||
Sbjct 569379 TGCAT 569383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109424952296495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |