Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq32 102 9e-17
seq22 82.4 9e-11
>seq32
Length=3524602
Score = 102 bits (112), Expect = 9e-17
Identities = 558/885 (63%), Gaps = 8/885 (1%)
Strand=Plus/Minus
Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014
|||||||| || |||| || || || || | |||| || ||||||||||| |||
Sbjct 2635037 CATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGC 2634978
Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074
|| | || || || ||||| |||| || || ||||| | | ||| | | |||
Sbjct 2634977 ATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCC 2634918
Query 48075 TTTATAACAGCTCT--AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATT 48132
|| | || |||| | | | | || | || ||| | || || | |||||| || |
Sbjct 2634917 TTCACCACC-CTCTTCACCCTCCCT-TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACT 2634860
Query 48133 CATCCCCATA-CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191
| || || | ||| | || | ||| ||||| || | ||||||||||| ||||| |||
Sbjct 2634859 CCTCTCCCCAGCAC-TCGTCCAGCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCC 2634801
Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA-AAGAGCTATAAATAAATC 48250
| | | | ||||| |||| || | || || ||||| ||| || ||| | ||
Sbjct 2634800 TGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAA-AGGTC 2634742
Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310
|| | ||| | || || || || | ||| | || || || || ||||| | | ||
Sbjct 2634741 TCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTC 2634682
Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370
||||| ||||| | || || || | | || |||| || || || || || ||
Sbjct 2634681 GAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTC 2634622
Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430
| || | || || ||||| |||||||| | ||| ||||| | || || || | ||
Sbjct 2634621 GACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCC 2634562
Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490
||||| || | ||| || ||||| | | || || || | | | || || ||
Sbjct 2634561 GTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCC 2634502
Query 48491 ACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACT 48550
|| || || || || || || ||| | || ||||| || || || ||||| || ||
Sbjct 2634501 CCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 2634442
Query 48551 ATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATT 48610
|| || |||| | | || || || || |||| ||||| | || || | ||
Sbjct 2634441 GTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTT 2634382
Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670
|| | || ||||| || || | ||||| ||||| || | | || || || || ||
Sbjct 2634381 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGAT 2634322
Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730
||| || || || | || || || | || || | ||| | ||| | || ||
Sbjct 2634321 GGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 2634262
Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790
| || | | ||| || || |||| || || || |||| || || |||||
Sbjct 2634261 CCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACC 2634202
Query 48791 AAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835
|| ||||||| || || || | || | ||| || || |||||
Sbjct 2634201 GAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATT 2634157
>seq22
Length=4020106
Score = 82.4 bits (90), Expect = 9e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716
||| ||||| | | | || || ||||| |||||||| |||||||| || |||||||||||
Sbjct 3877248 CATCACTCCGAATCTCTGGTACTCGGCTACTCTTTTCTCAAAGAAGTTTGTTTTTCCCTC 3877189
Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATATTTTTT 18769
| || || | ||||| || ||||| ||||||| ||||| || | ||||
Sbjct 3877188 CAGAGAAATGGACTCCATGAAGTCAAAAGGATTTTCCACATTGTAAACCTTTT 3877136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562080799955400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |