Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq32 102 9e-17 seq22 82.4 9e-11 >seq32 Length=3524602 Score = 102 bits (112), Expect = 9e-17 Identities = 558/885 (63%), Gaps = 8/885 (1%) Strand=Plus/Minus Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 |||||||| || |||| || || || || | |||| || ||||||||||| ||| Sbjct 2635037 CATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGC 2634978 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 || | || || || ||||| |||| || || ||||| | | ||| | | ||| Sbjct 2634977 ATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCC 2634918 Query 48075 TTTATAACAGCTCT--AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATT 48132 || | || |||| | | | | || | || ||| | || || | |||||| || | Sbjct 2634917 TTCACCACC-CTCTTCACCCTCCCT-TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACT 2634860 Query 48133 CATCCCCATA-CACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191 | || || | ||| | || | ||| ||||| || | ||||||||||| ||||| ||| Sbjct 2634859 CCTCTCCCCAGCAC-TCGTCCAGCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCC 2634801 Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA-AAGAGCTATAAATAAATC 48250 | | | | ||||| |||| || | || || ||||| ||| || ||| | || Sbjct 2634800 TGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAA-AGGTC 2634742 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 || | ||| | || || || || | ||| | || || || || ||||| | | || Sbjct 2634741 TCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTC 2634682 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 ||||| ||||| | || || || | | || |||| || || || || || || Sbjct 2634681 GAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTC 2634622 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | || | || || ||||| |||||||| | ||| ||||| | || || || | || Sbjct 2634621 GACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCC 2634562 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACC 48490 ||||| || | ||| || ||||| | | || || || | | | || || || Sbjct 2634561 GTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCC 2634502 Query 48491 ACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACT 48550 || || || || || || || ||| | || ||||| || || || ||||| || || Sbjct 2634501 CCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 2634442 Query 48551 ATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATT 48610 || || |||| | | || || || || |||| ||||| | || || | || Sbjct 2634441 GTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTT 2634382 Query 48611 AAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAAT 48670 || | || ||||| || || | ||||| ||||| || | | || || || || || Sbjct 2634381 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGAT 2634322 Query 48671 AACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGG 48730 ||| || || || | || || || | || || | ||| | ||| | || || Sbjct 2634321 GGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 2634262 Query 48731 TCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACC 48790 | || | | ||| || || |||| || || || |||| || || ||||| Sbjct 2634261 CCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAACC 2634202 Query 48791 AAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 || ||||||| || || || | || | ||| || || ||||| Sbjct 2634201 GAAGAAGTTGTAGGAGAAATCTCTGTCGTAAATGATGGAGGAATT 2634157 >seq22 Length=4020106 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | | || || ||||| |||||||| |||||||| || ||||||||||| Sbjct 3877248 CATCACTCCGAATCTCTGGTACTCGGCTACTCTTTTCTCAAAGAAGTTTGTTTTTCCCTC 3877189 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATATTTTTT 18769 | || || | ||||| || ||||| ||||||| ||||| || | |||| Sbjct 3877188 CAGAGAAATGGACTCCATGAAGTCAAAAGGATTTTCCACATTGTAAACCTTTT 3877136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562080799955400