Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq271 183 2e-40 seq292 114 1e-19 seq621 102 7e-16 seq15 98.7 8e-15 seq106 91.5 1e-12 seq64 91.5 1e-12 >seq271 Length=890306 Score = 183 bits (202), Expect = 2e-40 Identities = 403/594 (68%), Gaps = 14/594 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||| || || | || |||| ||||| Sbjct 267827 ATTGGCATTGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 267768 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||||||||||||||||||||| ||||| || ||||| || || | || || || Sbjct 267767 GAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACTGAC 267708 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAAT 550171 || || | | || ||||| || || | ||| |||| || || || ||||| Sbjct 267707 ACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCCACCAAC 267651 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| ||||| | ||||||||||| ||| |||| | || ||| | Sbjct 267650 ACAATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCT 267591 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| | ||||| ||| | | | || | ||||| || | | | || | Sbjct 267590 GACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCC-CAAAGTCCAGGT 267532 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||||| |||| ||| | || ||| | ||||| || ||||| | Sbjct 267531 GGAAT-ATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGTCCTGG 267473 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | ||||||| | ||| |||| || ||| | || || || || |||| || || | Sbjct 267472 TTAAAATGAGAGAAATAGCCGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCA 267413 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||||||| || ||| | ||||| || || ||||||||| || Sbjct 267412 CAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCT 267353 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| |||||||| || || || ||||| || || || || || |||| ||||| | Sbjct 267352 CCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCGGCAGCCATTGCCTATGGCC 267293 Query 550530 TTGATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||| ||| || || || ||| | || || |||||||||||| ||| || Sbjct 267292 TTGACAAAGGCA-AAAGA-GGAGAGCGCAACGTCCTCATCTTTGATCTTGGTGG 267241 Score = 154 bits (170), Expect = 1e-31 Identities = 435/666 (65%), Gaps = 8/666 (1%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || |||||||| ||||| || | || | || || | ||||| | | ||||| | Sbjct 267053 ACAGCTTGCGAGAGAGCAAAGAGGACTTTGTCCTCCAGCACTCAGGCAAGCATTGAGATT 266994 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 |||||| | |||||||| ||||| | | | || | || | ||||| || || || Sbjct 266993 GATTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTCGAGGAG 266934 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | || || ||||| || |||| | || ||||| || | | || |||| | Sbjct 266933 CTCAACTCGGACCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGCT 266874 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | ||||||||||| | || ||| |||| || ||||| || ||||||||||| || Sbjct 266873 AAGCTGGATAAATCCAAGATCCACGAAGTTGTCCTAGTTGGCGGCTCTACAAGAATCCCC 266814 Query 552153 AAAATTCGCGAAATG----TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGT 552208 ||||| | ||| | | || ||| |||||||||| | | |||| | || | Sbjct 266813 AAAAT---CCAAAAGCTCCTGCAGGACTT-CTTCAATGGTAGAGAGCTAAACAAGAGCAT 266758 Query 552209 TAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACA 552268 || || |||||||| || ||||||||||| || | || || ||||| || || | Sbjct 266757 CAACCCTGATGAGGCGGTGGCCTATGGTGCAGCCGTCCAGGCTGCTATCCTCATGGGTGA 266698 Query 552269 AACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || ||||| | ||| || | | || | ||||| |||| | || || || | Sbjct 266697 CACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCTCCCTTGTCGCTGGGCAT 266638 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 ||||||| || || ||||||| ||||||| | |||| || || || || || Sbjct 266637 TGAAACAGCCGGTGGCGTTATGACACCTCTTATCAAGCGAAACACCACCATCCCCACGAA 266578 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 | ||| | || || || || |||||||| || | | || ||||| | | Sbjct 266577 GCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGAGTCTTGATTCAGGTCTA 266518 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 || || || ||| | || || || || |||| || || | ||| | | || Sbjct 266517 CGAGGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTCTGG 266458 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 | ||||||||||||| | || || || || ||||||||||| || |||||||| ||||| Sbjct 266457 TCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATTGAAGTTACCTTTGATATCGACGCCAA 266398 Query 552569 TGGAAT 552574 || || Sbjct 266397 CGGCAT 266392 >seq292 Length=796020 Score = 114 bits (126), Expect = 1e-19 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| || ||||| || || || ||||| ||| | ||| || ||||| || | || Sbjct 171460 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCCGACAGG 171403 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || ||||| || ||||| || || || ||||| ||||||||||| Sbjct 171402 GTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATG 171343 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| ||||| ||| || || |||||| || ||| || | | || || Sbjct 171342 CCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTG-GGCTCCACCTC 171284 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||| || || ||||| |||||||| |||||||| ||||| Sbjct 171283 CAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 171239 Score = 114 bits (126), Expect = 1e-19 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| || ||||| || || || ||||| ||| | ||| || ||||| || | || Sbjct 171688 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCCGACAGG 171631 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || ||||| || ||||| || ||||| ||||| ||||||||||| Sbjct 171630 GTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATG 171571 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||||||||| ||||| ||| || || |||||| |||||| || | | || || Sbjct 171570 CCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTG-GGCTCCACCTC 171512 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || ||||| |||||||| ||||| Sbjct 171511 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 171467 >seq621 Length=215567 Score = 102 bits (112), Expect = 7e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| || || || |||||||| || ||||| || || || |||| Sbjct 119454 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 119513 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||| | ||||| ||||||||||| ||||| ||||| Sbjct 119514 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 119573 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 119574 TTGCCTATGGGCTGGACAA 119592 Score = 95.1 bits (104), Expect = 1e-13 Identities = 137/188 (73%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | |||||||| || ||||||||||| | || |||| ||||||||| Sbjct 118774 GGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 118833 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| ||||| ||||| || || || ||||| ||||||| || || Sbjct 118834 ATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACAGATACC 118893 Query 550118 GA-ACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATAC 550173 || | | | | |||| || ||||| || |||| |||| || || |||||||| || Sbjct 118894 GAGAGACTGA-TTGGAGACGCAGCCAAGAATCAGGTTGCCA-TG--AACCCTACCAACAC 118949 Query 550174 TATTTTTG 550181 |||||| Sbjct 118950 AGTTTTTG 118957 Score = 89.7 bits (98), Expect = 4e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| |||||||||||||||||||| || || || ||||| || || |||||||| ||||| Sbjct 120681 AGGAATTCCTCCTGCTCCTCGTGGCGTTCCACAGATTGAGGTGACATTCGATATTGATGC 120740 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 ||||| || ||||||| ||||| ||| ||| Sbjct 120741 TAATGGCATCATGAATGTCTCTGCTGTTGACAAA 120774 >seq15 Length=4650977 Score = 98.7 bits (108), Expect = 8e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| |||||||| ||||| || ||||| |||||| |||||||| |||| || || Sbjct 564580 CCTCAGACGGAGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 564639 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || ||||||||||| || || || ||||| ||||| || || || Sbjct 564640 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 564699 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || ||||| || ||||| ||| || |||||| || || || | | || || | Sbjct 564700 CTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTG-GGCTCCACCTCCA 564758 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| || || || || || || || || ||||| Sbjct 564759 GGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 564801 Score = 89.7 bits (98), Expect = 4e-12 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| || || || || || |||||| || ||||| |||| || || Sbjct 569618 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 569677 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | |||||| || || ||||||||||| || || || ||||| ||||| || || || Sbjct 569678 GCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 569737 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGA 563431 || ||||| || || || || || |||||| || ||| || | | || || | Sbjct 569738 CTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTG-GGCTCCACCTCAA 569796 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | ||||| || || || ||||| || || || ||||| Sbjct 569797 GGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 569839 >seq106 Length=2002839 Score = 91.5 bits (100), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || |||||||| || ||||| | Sbjct 707187 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGACG 707128 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || || | || || ||||| ||||| |||||||||||||| || || || || Sbjct 707127 CCGGTACCATCTCCGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCCGCAGCCA 707068 Query 550518 TTGCATATGGACTTG 550532 ||||||| || |||| Sbjct 707067 TTGCATACGG-CTTG 707054 >seq64 Length=2651320 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| || || || |||||||| || || || || || ||||||| Sbjct 2077077 ATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 2077018 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || |||||||| ||||| || || || || || |||||||| Sbjct 2077017 CTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTGCTGCCA 2076958 Query 550518 TTGCATATGG 550527 |||| || || Sbjct 2076957 TTGCTTACGG 2076948 Score = 91.5 bits (100), Expect = 1e-12 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| || || || |||||||| || || || || || ||||||| Sbjct 2089983 ATGCCGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 2089924 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || |||||||| ||||| || || || || || |||||||| Sbjct 2089923 CTGGGACCATTTCTGGGCTCAATGTTCTGCGTATCATTAACGAGCCAACAGCTGCTGCCA 2089864 Query 550518 TTGCATATGG 550527 |||| || || Sbjct 2089863 TTGCTTACGG 2089854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029085255227650