Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq15 113 4e-20 seq292 91.5 1e-13 >seq15 Length=4650977 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| ||||||||||| |||||||| || | | || | | |||| |||| ||| Sbjct 564599 TGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 564658 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || || ||||| || ||||| || ||||| Sbjct 564659 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTG 564718 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || | || | ||||| | ||||| || || |||| ||||||||||| Sbjct 564719 GCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTG 564778 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACG 101476 | || || ||||| ||||||||| || || Sbjct 564779 AGGGTCTTGACAAAGATCTGCATGTTTGCG 564808 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| | || |||||||||||||| || || ||||| |||| Sbjct 564119 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAC 564178 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| || || || || Sbjct 564179 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 564238 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || ||||| || ||||| || || | || | ||||| | ||||||| Sbjct 564239 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACT 564298 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || |||||||| | || || || || ||||||||| Sbjct 564299 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 564346 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || |||||||| || || ||||| || | | || | | |||| |||| ||| Sbjct 569637 TGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 569696 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || || ||||| || ||||| || || || Sbjct 569697 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTG 569756 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| ||||| |||| ||||||||||| Sbjct 569757 GCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTG 569816 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 569817 AGGGTTTTCACAAAGATCTGCAT 569839 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || |||||||| || || ||||| || | | || | | |||| |||| ||| Sbjct 569409 TGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 569468 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || || ||||| || ||||| || ||||| Sbjct 569469 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTG 569528 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||| | ||||| |||| ||||||||||| Sbjct 569529 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGTTTTGCCGGTG 569588 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | || || | || ||||||||| Sbjct 569589 AGGGTCTTGCCGAAGATCTGCATG 569612 >seq292 Length=796020 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | || | | |||| |||| || Sbjct 171441 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGT 171382 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| || | | ||| || || || ||||||||||||||||| ||||| ||| Sbjct 171381 TTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTT 171322 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||||| || || || | || || || || Sbjct 171321 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTG 171262 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | |||||| || || |||||||| Sbjct 171261 AGAGTTTTCACGAAAATCTGCAT 171239 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | || | | |||| |||| || Sbjct 171669 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGT 171610 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || || || ||||||||||||||||| ||||| ||| Sbjct 171609 TTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTT 171550 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || ||| | ||||| || || |||| || || || || Sbjct 171549 GCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTG 171490 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || ||||||||| Sbjct 171489 AGGGTTTTCACGAAAATCTGCATG 171466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396259153872645