Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq32 365 8e-96 seq169 96.9 6e-15 seq146 93.3 8e-14 seq22 87.8 3e-12 >seq32 Length=3524602 Score = 365 bits (404), Expect = 8e-96 Identities = 1039/1596 (65%), Gaps = 47/1596 (3%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || | ||| ||| |||||| | ||| ||| || | Sbjct 2635728 CATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGAT 2635669 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || |||||||| | ||| | ||| ||| ||| |||||| Sbjct 2635668 CTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGA 2635609 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| || Sbjct 2635608 CTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCT 2635549 Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACAGTGTCCTCC 221304 ||| | || ||| | | ||| || ||||| |||||||| || Sbjct 2635548 GTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA--------- 2635498 Query 221305 CAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGGACT 221364 |||||| ||| || || Sbjct 2635497 CAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTACTGACGGGCGA 2635438 Query 221365 CCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGG 221423 || ||||| | ||||||||| ||| | | |||| | |||| | || || |||| Sbjct 2635437 GCCCTCGTATGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCA-GCTGGCCTCCAGGG 2635379 Query 221424 CAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGA 221483 | ||||||||||||||||| |||||| ||||||| || ||| ||||| || Sbjct 2635378 CGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGA 2635319 Query 221484 AGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543 | || |||| || ||| | |||||||| ||||| || ||||| ||||| |||| Sbjct 2635318 ACGGATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCC 2635259 Query 221544 TGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGAT 221603 |||| | | ||||||| | | ||||| || || || || | |||| |||||| | | Sbjct 2635258 TGTGGCGCTTGTTGGACGTCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCT 2635199 Query 221604 TGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCA 221663 |||||||||| ||| || || || || |||||||| | | ||| Sbjct 2635198 TGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA----- 2635144 Query 221664 ACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTAC 221723 | || | | | |||| | ||| ||| ||||| | | ||||||||| | Sbjct 2635143 AGTCCGCTCTGGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGTTGC 2635094 Query 221724 ACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACT 221783 | |||||||||||||||||| |||| |||| | | |||||| |||||||||||||| | Sbjct 2635093 AGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATT 2635034 Query 221784 TGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAA 221843 ||||||| ||||||| | || || ||| | ||| |||||||||||||||||| Sbjct 2635033 TGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGT 2634974 Query 221844 AGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTC 221902 |||| || || || ||| | | | | || || |||||| | ||| || || Sbjct 2634973 AGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG-CTGCGCCTTC 2634915 Query 221903 ACCGTCCTCTTGACTGCACCCTCGGT--CTTTTCATACCCGGTATAGAGCATGTCAAACT 221960 ||| |||||| ||||||| | ||| ||||| | ||| |||||| | || |||| Sbjct 2634914 ACCACCCTCTT-----CACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACT 2634860 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 || || | ||||||||| || |||||| | ||||||||||| ||||| || Sbjct 2634859 CCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCCT 2634800 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 |||| | || |||| |||||| |||||||||||||||| || | || || |||| Sbjct 2634799 GGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTC 2634740 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 ||| | |||||||||| || |||| ||| |||| |||| || || || | ||| Sbjct 2634739 TGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGA 2634680 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 ||||||||| ||||| || | ||| | || ||||||| ||||||||| ||||| || | Sbjct 2634679 AGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGA 2634620 Query 222201 CCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGT 222260 | | || |||| | | | || |||| |||| ||||||||| |||| Sbjct 2634619 CGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGT 2634560 Query 222261 TGGTGCCCTTAATGTACGCACCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACC 222318 ||||||| |||||| || | ||| | || | | || | | || |||||| || Sbjct 2634559 TGGTGCCGGCAATGTA-GCTTC-CCGTCGATCGGATGCAGCTCACCGCCACGCCGATCCC 2634502 Query 222319 ACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGA 222378 || ||| || || || | ||||| ||| || ||||| |||||| || || Sbjct 2634501 CCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 2634442 Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||| ||||| | | | ||||| || || |||| ||| | | ||| | |||||| Sbjct 2634441 GTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTT 2634382 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTAC 222498 || || || ||| |||||| || || | | |||| || | ||| ||||| | Sbjct 2634381 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGAT 2634322 Query 222499 GACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGG 222558 | | | | |||| |||||| ||| | | |||||| ||||| ||| || Sbjct 2634321 GGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 2634262 Query 222559 CCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAA 222615 || || |||| ||| | || || |||||||| || |||||||||||||| Sbjct 2634261 CCGCTCGGCCAC-TTTCCCGTTGATCT--TCAGCAGGTAGGAGCGCTCCAGAGTCTTGAA 2634205 Query 222616 CCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAA 222650 || ||| ||||| ||| ||| |||||| ||| || Sbjct 2634204 ACCGAAGAAGTTGTAGGAGAAA-TCTCTGTCGTAAA 2634170 >seq169 Length=1474717 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| ||||| |||||||| ||||| ||| |||||||| || |||||||||| Sbjct 1314726 TGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCT 1314785 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || ||||| || || ||| ||||||||||||||| | | Sbjct 1314786 GGCTGAAGAAGAGAGGCCTGATGCCTGGCCTAACCTTCAGCAACGAGCTCATCAGTCGAG 1314845 Query 26003 ACGAGG 26008 |||||| Sbjct 1314846 ACGAGG 1314851 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 1315629 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 1315688 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 1315689 CGGGTCGGGGAGTACCA 1315705 >seq146 Length=1599760 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||| |||||||| || ||||||| || || || ||||||| | |||||| || Sbjct 272192 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 272251 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 || |||| ||| |||| |||||||||||||| | |||||| |||||||||||||| Sbjct 272252 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 272311 Query 222157 ATAGAC 222162 || || Sbjct 272312 GTACAC 272317 >seq22 Length=4020106 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| || || || || || || |||||||| ||||| ||| || || || || Sbjct 3875833 GGGGAGCGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCT 3875892 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || |||| |||||| ||| ||| || |||||| || || || |||||||| ||| Sbjct 3875893 GCTATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTC 3875952 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||||||||||| Sbjct 3875953 ATTAGCAGGGACGAGG 3875968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928798531918400