Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq271 174 1e-37 seq621 95.1 8e-14 seq106 89.7 3e-12 seq292 87.8 1e-11 seq7 87.8 1e-11 >seq271 Length=890306 Score = 174 bits (192), Expect = 1e-37 Identities = 373/553 (67%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| |||||| | || || || ||| |||||| | || | || ||| Sbjct 267835 GAATATCCATTGGCATTGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 267776 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| ||||||||||| ||||| || || ||||| || || || | | Sbjct 267775 GAAAAGTGGAAATTATTGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 267716 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || || || || ||||||||||| || | |||| ||| || || Sbjct 267715 TTACTGACACAGAGAGGCTCATCGGAGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 267656 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | | |||||||| |||| Sbjct 267655 CCAACACAATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 267596 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621 | ||||| ||| | ||||| || |||||||| || | || || || | | Sbjct 267595 AGTCTGACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 267536 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||| | ||| |||| ||| ||| | || ||| | ||||| || ||||| Sbjct 267535 AGGTGGAATATA--AAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGT 267478 Query 474682 TTTAGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | ||||||| | ||| | |||| | | ||| ||||| || | |||| | Sbjct 267477 CCTGGTTAAAATGAGAGAAATAGCCGAG-GCCTTTCTGGGACAGAGGGTGTCGAATGCGG 267419 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| || ||||||||||| ||| | ||||| || || ||||| ||| Sbjct 267418 TCATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAG 267359 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || || |||||| | || || || ||||| || ||||| || || |||| | Sbjct 267358 TGATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCGGCAGCCATTGCCT 267299 Query 474861 ATGGTCTTGATAA 474873 |||| ||||| || Sbjct 267298 ATGGCCTTGACAA 267286 >seq621 Length=215567 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || || || || || || || ||||| || || ||||| || || || |||| Sbjct 119454 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAGGATG 119513 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | || | || || |||||||| ||||| || ||||||||||| ||||| || Sbjct 119514 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCAACTGCAGCTGCTA 119573 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| || || ||||| Sbjct 119574 TTGCCTATGGGCTGGACAAGAA 119595 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| || ||| | ||||| || ||| ||||| | ||| | || |||| ||| Sbjct 118768 GCAGTTGGAATCGATCTTGGAACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAA 118827 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||||||||| || || || ||||| ||||| |||| || Sbjct 118828 GTTGAAATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACA 118887 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || || || || |||||||| || || || |||| | ||| Sbjct 118888 GATACCGAGAGACTGATTGGAGACGCAGCCAAGAATCAGGTTGC 118931 >seq106 Length=2002839 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || || ||||| ||||| | | | | || |||| ||| Sbjct 707855 GCAGTAGGCATTGATCTGGGCACCACTTATTCATGTGTGGGTATCTTCCAGCATGGCAAA 707796 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || ||||| || ||| ||||| | || ||| Sbjct 707795 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACCCCAAGCTATGTGGCCTTCACT 707736 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || ||||||||||||||||| || Sbjct 707735 GACACAGAGAGGCTTATTGGAGATGCTGCCAA 707704 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAA- 476089 ||||| |||||| | || |||||||| || | ||||| || ||| ||| ||| Sbjct 704948 GAAGGGGAAAGAGCCATGACCAAAGATAACAATAT-CTTGGGGAAATTTGAAT--TGACT 704892 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| || ||||||||||||||||| ||||| || || || || ||||| |||||||| Sbjct 704891 GGTATCCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATTGATGCC 704832 Query 476150 AATGGTATTCTTAATGT 476166 || || ||||| || || Sbjct 704831 AACGGCATTCTCAACGT 704815 >seq292 Length=796020 Score = 87.8 bits (96), Expect = 1e-11 Identities = 120/168 (71%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || || || |||||||| || || | || || ||||||||||| ||||| || Sbjct 171394 ATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTT 171335 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || ||||||||| || || ||||| || ||| || | || |||||||| Sbjct 171334 ATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAAT 171275 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACGACATCTTTAA 480784 || || || |||||||| || |||||||| || ||||||||| Sbjct 171274 GGTCTTCCCAGTGAGAGTTTTCACGAAAATCTG------CATCTTTAA 171233 >seq7 Length=6276451 Score = 87.8 bits (96), Expect = 1e-11 Identities = 115/156 (74%), Gaps = 5/156 (3%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || || || |||||||||||||| ||||| | | || || |||||||| | || || Sbjct 5325119 GTGGAGATTATTGCCAATGACCAGGGTAACCGCATCACCCCCTCATATGTGGCCTTCACC 5325178 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 ||| ||| | ||| ||||| ||||||||||| ||| ||||| | ||||| |||| Sbjct 5325179 AGTGAGGGTGAGCGTCTCATTGGTGATGCTGCTAAGAATC-AGCTGACCTCTAACCCTGA 5325237 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCG 474540 || || | |||||||| || || |||||||||| Sbjct 5325238 GAACACAGTCTTTGATGCCAAGAGGCTGATTGGTCG 5325273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268008264014780