Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq32 201 1e-46 seq15 113 4e-20 seq292 111 1e-19 >seq32 Length=3524602 Score = 201 bits (222), Expect = 1e-46 Identities = 975/1525 (64%), Gaps = 47/1525 (3%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | || ||| || || |||| || || | || ||| |||||| ||||| | | Sbjct 2635677 GTTGACGATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGC 2635618 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| | || |||||||| ||||| ||||| || |||| ||| || |||||| ||||| Sbjct 2635617 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAG 2635558 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 || || |||| | ||||| ||| ||||| ||| | ||||||||| Sbjct 2635557 CAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCA 2635498 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 || ||| | || | || | |||||| |||||||| | || ||| ||| |||| Sbjct 2635497 CAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTACTGACGGGCGA 2635438 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||| ||||| | ||||| || | |||| || | ||| ||| ||||| || || Sbjct 2635437 GCCCTCGTATGTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTCCAGGGC 2635378 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 | | ||| || || ||| ||||| ||||||| |||| |||| ||| ||| | Sbjct 2635377 GGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGGGCTTCGGGGCTTTCGAA 2635318 Query 138861 CGGCATG-CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGC 138919 ||| ||| || | || |||| || |||||||| || || ||||| | |||| || | Sbjct 2635317 CGG-ATGTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCC 2635259 Query 138920 GATGGCGCAGATTTGACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGA 138976 |||||| || |||| | ||||||| || || || || || | ||||||| Sbjct 2635258 TGTGGCGCTTGTTGGACG---TCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGA 2635202 Query 138977 TTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGCTTTAATCGTTCAAAATCGTA 139034 | ||||| | ||| ||||| ||||| || || | || || | || ||| | Sbjct 2635201 TCTTGTTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTC--TTGAAGTCGAA 2635144 Query 139035 TGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTT 139094 || || | || ||| ||||| ||| |||||| || ||||| | ||| Sbjct 2635143 AGT--CCGCTCTGGCGT----GACGT--ACA----TGTTGAGGGCGATGGAGGCCAGGTT 2635096 Query 139095 GCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACA 139154 ||| || ||||| ||||| | | |||| || || | || | || | || || || Sbjct 2635095 GCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCA 2635036 Query 139155 CTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCAT 139214 ||||| || || | || || || ||||| || | ||| ||||| || ||||| ||||| Sbjct 2635035 TTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCAT 2634976 Query 139215 ATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTG 139274 || || || || ||||| || | ||| || ||| | | | | | || | Sbjct 2634975 GTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTT 2634916 Query 139275 TATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCG 139331 | || | | | | | | || ||| || | |||||| | ||||| || Sbjct 2634915 CA--CCACCCTCTTCACCCTCCCTTCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCC 2634858 Query 139332 T-TCACC-GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACG 139389 | || || | | |||| || || |||||| | |||||||| | ||||| | Sbjct 2634857 TCTCCCCAGCACTCGTC---CAGCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCC 2634801 Query 139390 CCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449 ||| || || | | |||||||||| ||||| |||||||| ||| | | | || Sbjct 2634800 TGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCT 2634741 Query 139450 CGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCA 139509 | || ||| || ||| || |||| |||| | ||||| || || ||||| Sbjct 2634740 CTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCG 2634681 Query 139510 GCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCG 139566 |||||| |||||||| || ||||| | || || | || ||||| || || ||| Sbjct 2634680 AAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCG 2634621 Query 139567 ACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCG 139626 |||| || | | || ||| | || | || |||||| ||| ||| | | | ||| Sbjct 2634620 ACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCG 2634561 Query 139627 TTGGTGCTACGG--ATGGGACTGTTGCG-AGCTCGGACGTCATGT-ACATTGATGCCGAT 139682 ||||||| ||| ||| || | || | ||||| | || | || | |||||| Sbjct 2634560 TTGGTGC--CGGCAATGTAGCT-TCCCGTCGATCGGATG-CAGCTCACCGCCACGCCGAT 2634505 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTA 139741 || || | | ||||| || | |||| | || | | || ||||| || ||| | Sbjct 2634504 CCCCCCAGCGGACTTGGAAATGAGCGCGCACT-GCTTCAGGGTGTCGTAGATGCCTTCGA 2634446 Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 |||||||||||| ||| |||| ||| ||||| || || ||||| | || || |||| Sbjct 2634445 TGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGG 2634386 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTT 139861 | || || || ||| ||||| |||||| | | ||||| | | ||| || | Sbjct 2634385 CGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCT 2634326 Query 139862 CGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTT 139921 ||||||| |||| || | |||||||| || || || || | ||| ||||| || | Sbjct 2634325 CGATGGCAGCGTCAATGTCTCGCCCGTGGATCCCAACCGACACCCTCATGAGCATGTGCT 2634266 Query 139922 GGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGT 139981 | ||| |||||||| || | ||| || ||| || | ||| || |||||| Sbjct 2634265 GCGGCCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGA 2634206 Query 139982 AGCCAAAGTACCTATAGTTGAAATC 140006 | || ||| | | ||| |||||| Sbjct 2634205 AACCGAAGAAGTTGTAGGAGAAATC 2634181 >seq15 Length=4650977 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 569840 GATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCCAG 569781 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 569780 TGACACCATTGAGAATGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCA 569721 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 569720 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 569661 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || ||||| ||||| ||| |||| Sbjct 569660 CATCCAGAAAGAATCCACACTCCACCTGGT 569631 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || ||||| ||| ||| | Sbjct 564345 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGC 564286 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| || || || || || || || || || Sbjct 564285 GACACCATTGAGAACGTCAAGGCCAAA-ATCCAGGATAAGGAGGGCATCCCCCCTGACCA 564227 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||||||| | | | |||| || || || Sbjct 564226 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 564167 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || ||||| || || ||| Sbjct 564166 CATCCAGAAAGAATCTACCCTCCAC 564142 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| ||||| || || || || || || ||| | Sbjct 564801 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 564742 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||| ||||| || || || || || || || || || Sbjct 564741 GACACCATTGAGAACGTCAAAGCCAAA-ATCCAGGATAAGGAGGGCATCCCCCCTGACCA 564683 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 564682 GCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 564623 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 || ||||| ||||| || || ||| Sbjct 564622 TATCCAAAAAGAATCCACCCTCCAC 564598 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 564573 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 564514 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || || || || || || || || Sbjct 564513 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 564454 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 564453 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 564394 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 564393 ATCCAGAAGGAGTCCACCCTTCACCTGGT 564365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| || || || ||||| ||||| || || || || | || ||| Sbjct 569611 ATGCAGATCTTCGGCAAGACCCTCACCGGCAAAACCATCACCCTTGAGGGGGAGCCCAGT 569552 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| || || || || || || || || || Sbjct 569551 GACACCATTGAGAACGTCAAGGCCAAA-ATCCAGGATAAGGAGGGCATCCCCCCTGACCA 569493 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 569492 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 569433 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || ||||| ||||| ||| |||| Sbjct 569432 CATCCAGAAAGAATCCACACTCCACCTGGT 569403 >seq292 Length=796020 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || ||||| || || || || ||| Sbjct 171238 GATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAGCCCAG 171297 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||| || || |||||||| || ||||| || || Sbjct 171298 TGACACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCA 171357 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || ||||||||||| ||| | | | |||| || || || Sbjct 171358 GCAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAA 171417 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| || || || ||| ||||| | || || | |||||| Sbjct 171418 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGGC 171466 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || || || || || || || || || ||| Sbjct 171467 ATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 171526 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||| || || |||||||| || ||||| || || Sbjct 171527 GATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAG 171586 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || ||||||||||| ||| | | | |||| || || ||| Sbjct 171587 CAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAAC 171646 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| ||||| | || || | ||||| Sbjct 171647 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTGAGGGGAGG 171693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449875189475800