Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq292 122 7e-23 seq15 109 4e-19 >seq292 Length=796020 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||||| || ||||||| || || ||||| || || || ||||| || |||| Sbjct 171694 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 171635 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| ||| || || |||||||||||| | |||| ||| ||||| || || || Sbjct 171634 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 171575 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || ||||| || || ||| |||| || || | || | || ||| | || | Sbjct 171574 AATGCCTTCTTTATCCTG-AATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCA 171516 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || ||||| | |||||| || || |||||||| Sbjct 171515 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 171467 >seq15 Length=4650977 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || |||| || || ||||||||||| || ||||| || || | Sbjct 569613 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 569672 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||| || ||||| || || || Sbjct 569673 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 569732 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || || ||| | || | |||||| | || || Sbjct 569733 ATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACC 569792 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || |||||||| || | |||||| ||||| |||||||| || Sbjct 569793 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 569842 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| || || | || || |||||||||||||| || || || || | Sbjct 564575 CCACCCCTCAGACGGAGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGAC 564634 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | |||| || ||||| || || || Sbjct 564635 AGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 564694 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | ||| |||||| | || | ||||| | || || Sbjct 564695 ATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACC 564754 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || |||||||| || | ||| || ||||| |||||||| || Sbjct 564755 TCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 564804 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| || |||| || || ||||||||||| || ||||| || || | Sbjct 569385 CCACCCCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGAC 569444 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || ||||| || || || Sbjct 569445 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 569504 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | ||| ||||| | || | |||||| | || | Sbjct 569505 ATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCC 569564 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || |||||||| || | ||| || | || |||||||| Sbjct 569565 TCAAGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385200490986885