Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq32 351 1e-91 seq15 138 1e-27 seq292 122 8e-23 seq146 91.5 1e-13 >seq32 Length=3524602 Score = 351 bits (388), Expect = 1e-91 Identities = 1014/1538 (66%), Gaps = 48/1538 (3%) Strand=Plus/Minus Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| ||||||| | || || | | || || | ||| ||||| |||| ||||| | Sbjct 2635705 GCTCCGTCAGGTCCTTGAGGAGGTGAGGGTTGACGATCTGGAACTCTCCGGACAGCACCC 2635646 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 || || | |||||| || ||| || | |||||||||||||||| ||||| | Sbjct 2635645 TGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGG 2635586 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 |||| | |||||||||||| ||| | |||||| ||| | || ||| | || | Sbjct 2635585 CGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGA 2635526 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 | || |||||| | ||||||||| || | ||| ||| | ||||||||||| Sbjct 2635525 TCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGGCGTCTTCTCCCACATGTCGT 2635466 Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCG 148530 |||| || ||||| || |||| ||||||||| | ||| || ||| || | | Sbjct 2635465 ACTGGAGGATGCCCTTACTGACGGGCGAGCCCTCGTATGTCTCGTAGGGGCCGAGCTCTG 2635406 Query 148531 CCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 | || ||||||||||| ||||| || ||| ||| ||| || |||||| || || ||| Sbjct 2635405 CGGCGAGTTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 2635346 Query 148591 TGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAA 148650 |||||||| || ||||||| |||| |||| | | | || || ||||| | Sbjct 2635345 TGAGCAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATCAGGATGAAGGCATCGGCCA 2635286 Query 148651 GGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC-- 148708 | ||||| ||||| | || || |||| ||| ||||||| | | || ||| || Sbjct 2635285 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGA-CGTCTCG-GCT-TCGG 2635229 Query 148709 -GAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || ||| |||| ||| |||||||||||||| || || ||| | ||||| || | Sbjct 2635228 GGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTTTTTCACGATTACCTTGGTGA 2635169 Query 148768 TTCTGCGCAGCAATTCAAAATCGTACTTGTCATCT------ACGATGCATCGGTTCACGG 148821 | |||| | || ||| | | ||| ||| | ||| ||| | || Sbjct 2635168 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACG-TACAT--GTTGAGGG 2635112 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 |||| ||||| || ||||| |||||| ||| ||| | | ||||||| || | ||| | Sbjct 2635111 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCTG 2635052 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 ||| || |||||||||||||| ||||| ||||| || |||||||| |||||||| | Sbjct 2635051 TGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAAG 2634992 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGAT 149001 |||||||||| |||||||| || || ||||| ||| | || | ||| || Sbjct 2634991 CGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTGGGACTCGATGATG--GCGTA 2634934 Query 149002 GC--AGGTCCTGCGCGCGCACTTGCTGCTCGT-AGCGACCC-TCCTGCTCGTATAAAGTA 149057 | || | |||||| ||| | ||| | | | ||| |||| ||| ||| || Sbjct 2634933 CCAGAGCTGCTGCGCCTTCACCACC--CTCTTCACCCTCCCTTCCTTCTCATATCTGGTG 2634876 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 || ||| ||||||| |||| || |||| ||||| || ||||| |||| | || ||| Sbjct 2634875 TAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGACACTCGCTGGGACAC 2634816 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 || | ||||| | || | ||| | |||||| ||||| || || | ||| | Sbjct 2634815 ATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCCGGGATCCACAAG 2634756 Query 149178 GCGTACATGAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGA 149235 ||||| | ||||| | || | ||| || || || |||| ||| | | Sbjct 2634755 GCGTAGAAAAGGTCTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCA 2634698 Query 149236 GCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CT 149289 | | | ||| | ||| ||||||||| || | ||||| |||| || || || Sbjct 2634697 GGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGAAGGCCCCGGGTCTCT 2634638 Query 149290 TGCGCTTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTT 149349 || ||||||||||||||||||| ||| || ||||||| | |||| | ||| || Sbjct 2634637 TG---TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAACTCTCAGCATCGGGA 2634581 Query 149350 CAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGT 149409 | | || ||| ||||||| || | |||| || || || ||| | | Sbjct 2634580 CCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGTCGATCGGATGCAGC 2634521 Query 149410 GCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCG 149469 ||| |||||||| || || || |||| || ||| |||||| | || || Sbjct 2634520 TCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCACTGCTTCAGGGTGT 2634461 Query 149470 AGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCG 149529 ||||||||| |||||||||||| ||||||||| ||||| ||||| | ||| |||| Sbjct 2634460 CGTAGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGCAGCTGGACAGCTGCG 2634401 Query 149530 GAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCA 149589 | || ||||| ||| | ||| || |||||| || || | |||| || Sbjct 2634400 GCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACA 2634341 Query 149590 TCATCTCGTACGACTCGA--GCACGCGGTCCATGTCATCG-CCATGGATGCCTATGGCGA 149646 | | ||| | ||||| ||| || ||| ||||| ||| || ||||| || | | | Sbjct 2634340 GGAGGTTGTAGGTCTCGATGGCA-GC-GTCAATGTC-TCGCCCGTGGATCCCAACCGACA 2634284 Query 149647 CGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTTGAGCAAGT 149703 | | ||| ||||| |||||||| ||||| |||||||| ||| || || |||| || Sbjct 2634283 CCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTT---GATCTTCAGCAGGT 2634227 Query 149704 AGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 || | || || |||||| | || ||| | |||||| Sbjct 2634226 AGGAGCGCTCCAGAGTCTTGAAACCGAAGAAGTTGTAG 2634189 >seq15 Length=4650977 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || |||||||| || ||||| ||| || ||| | | | ||||| |||||||||| Sbjct 564148 GGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 564206 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || ||| || || Sbjct 564207 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCT 564266 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| |||| ||||| || | ||||| ||| |||||||| || | Sbjct 564267 TGACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTGAGGG 564326 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 564327 TCTTGACGAAGATCTGCATG 564346 Score = 132 bits (146), Expect = 5e-26 Identities = 153/201 (76%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| ||||| || |||||||| || || ||| | | | || || |||||||| | Sbjct 564604 GGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 564662 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || ||| ||| ||| Sbjct 564663 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT-TTTGGCT 564721 Query 133582 T-GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | || | ||||| |||||| |||||||||| || | ||||| |||||||||||| || Sbjct 564722 TTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGG 564781 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||| Sbjct 564782 GTCTTGACAAAGATCTGCATG 564802 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || || ||| | | | || || |||||||| || Sbjct 569643 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTCC 569701 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| ||||| || |||||| ||| Sbjct 569702 GGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 569761 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| |||||||||| || | ||||| |||||||||||| || || Sbjct 569762 AACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGT 569821 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || |||||||| Sbjct 569822 TTTCACAAAGATCTGCAT 569839 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| || ||||| || || ||| | | | || || ||||||||||| Sbjct 569415 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 569473 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || |||||||| ||||| || ||| || ||| Sbjct 569474 AGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTT 569533 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||| | || | ||||| |||||||||||| || || Sbjct 569534 GACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGTTTTGCCGGTGAGGGT 569593 Query 133643 TTTTACGAAAATCTGCATG 133661 || |||| ||||||||| Sbjct 569594 CTTGCCGAAGATCTGCATG 569612 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || |||| ||||||||| || |||||||| ||||| Sbjct 569229 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTA 569288 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || |||| | ||||| ||||| ||||||| || || | ||||| Sbjct 569289 TCCTGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGAT 569347 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| || || || || ||||| ||||||||| Sbjct 569348 TGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 569384 >seq292 Length=796020 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || ||||| || | Sbjct 171436 GGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCTTCCAGCTGTTTAC 171378 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| ||||| |||||||| || || |||||| || Sbjct 171377 CAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCT 171318 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||| | ||| || || || |||| Sbjct 171317 TCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTCCCAGTGAGAG 171258 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 171257 TTTTCACGAAAATCTGCAT 171239 Score = 120 bits (132), Expect = 3e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || ||||| |||| Sbjct 171664 GGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 171606 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || | ||||||||| ||||| |||||||| || || |||||| || Sbjct 171605 CAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCT 171546 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||||||||| || | ||||| ||| || || || || | Sbjct 171545 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGG 171486 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 |||| ||||||||||||||| || Sbjct 171485 TTTTCACGAAAATCTGCATGCCT 171463 >seq146 Length=1599760 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||| || |||||||| | ||| ||||||||| | ||||| ||||| || | || | Sbjct 271731 TGTATTCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 271790 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || |||| |||||||| ||||||||||| ||||||||||| Sbjct 271791 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 271830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483396719601400