Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq82 138 1e-27 seq9 100 3e-16 >seq82 Length=2326230 Score = 138 bits (152), Expect = 1e-27 Identities = 489/751 (65%), Gaps = 25/751 (3%) Strand=Plus/Plus Query 162264 CCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACTGACGG 162323 |||||| || | | | || |||| ||||||| || ||||| || ||| || || Sbjct 591617 CCACTTGACAACTCGGGCGAGAGCCAGCATGTCCGACGTGTCATATTTGCCGTTTGGGGG 591676 Query 162324 CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACT 162383 ||| | ||||||||| | || ||||| || || ||||||| ||||||||||||||| Sbjct 591677 CACTGATCCAGGAACCGAGGACATCCTCTGCAGGGTGGCCCACATGTGTTCGTCTGGACT 591736 Query 162384 ATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTTATCGTATAGAATGTAAGA 162443 || || || || ||| |||||||| | | ||| | | | | | | ||| Sbjct 591737 GTATGTGTCTTTTTCCCATTCCATGAATTTCTGAACCTCTCTGTTCTGCATCACGTATTT 591796 Query 162444 GACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGG 162503 || ||| ||| | || | |||||| ||| | || || |||| || | | || || Sbjct 591797 CACAAAGGCCCTAGAGACCACAAAGTAGGCGTTTCCTGAGAACATTGGGCTACTGATGGG 591856 Query 162504 AGG-GGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCT 162562 || ||||| ||| || | || || ||| || || | |||| ||| | Sbjct 591857 CGGTGGGCTTTTTCTCACGTCC-GTTCTGATGACG---CCGTTGGCGACATTGTGGTGGT 591912 Query 162563 TCCTCCACCTGGCCATCTTACTGGTAGACG--GGTG--TTCGGTCTCTAGACTGTTACGA 162618 | ||| || | ||| || | |||| |||| ||| || || | ||||| Sbjct 591913 ACTGCCA----GCGACCTTTCTTGGAGACACTGGTGACTTCAGTTTCCATGCTGTT---- 591964 Query 162619 CCCCCCA---AGGCCTT-CAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTC 162674 || |||| ||| ||| ||| ||||||||| |||||| || | ||||||||| Sbjct 591965 CCTCCCATTGAGGACTTTCAGAGCCATCACCATCTCCCTATTGGTTTTGATGGGAAAGTC 592024 Query 162675 GGTGCCGCAGAGATTAATAACATATTTCCACTTAACG-CTGAGTCCGTACAGATCCTGTA 162733 || || ||| ||| | || ||||||||| ||| | |||| | |||||| | | Sbjct 592025 TGTCCCACAGGTATTCAAAAGGTATTTCCACCGAACTTCAGAGTGCAG-CAGATCTTTCA 592083 Query 162734 GACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAG 162793 ||||||||||| ||||| || | ||| || || ||||| || || || || || Sbjct 592084 TGCAGTTCAGATCTGCCTGCACTCTGGACCATGAAGCATACACAACACTTTCTAATTTAC 592143 Query 162794 TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC-GGCCAGTGAGAACATC 162852 |||| ||||| |||||| || || ||||||| || |||| | || |||| || | | Sbjct 592144 TGGCTACAAAAACATTGGGAAAGCAGGAAACTACTTCCTTCACAGCCCTGTGAAAAGA-C 592202 Query 162853 GGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTC 162912 || | ||| || | || |||||||| | ||||| || || || || | | Sbjct 592203 AGGGAAGACTTCTGGTCAATATGGACGCAGTAGATGTTCTGCGGAGCATAAATAGATCGT 592262 Query 162913 AGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAAC 162972 || | || || |||||||||||||| | ||| | ||| || || || || ||||| || Sbjct 592263 AGGAGTCGTTCAAACATCTCTATCTTCTCGTGGATCACCATGGAGTATGCAATGGGAAAA 592322 Query 162973 TCAGCCTCCTCGCGACTGAGAGACCCTGTAA 163003 | |||||| ||| | || | |||||| Sbjct 592323 TTTAGCTCCTCCTCACTTAAAGGCACTGTAA 592353 >seq9 Length=5495115 Score = 100 bits (110), Expect = 3e-16 Identities = 347/532 (65%), Gaps = 31/532 (6%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || || || | || | |||||| || ||||||||||| | || | Sbjct 4793082 GCCAGCTCTTTGGGTGAGCTGAAATCATCCACGTGGATAAAAGCGTCTCCTTGAACAAAG 4793023 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| || ||||| | || || || || | || || | |||| ||||| Sbjct 4793022 TTCTCGTAGTTTTCTCTGGTCGTGCCAAGAACCACCGGCACTG----TGCCCACAGAGAG 4792967 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 || ||||||||||| || || |||||| |||| | ||||||||||| | | ||| Sbjct 4792966 GGGGATGTAGAGTTTTTCTGTGATGTAGTCCTTGTGGATTGAGTTCTCAAAGGACAAATA 4792907 Query 177122 GAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179 || ||||| || | |||| |||||| | || | || | || || || || | | Sbjct 4792906 AAACTTACAACTAGCCACAGTA--GGGATGTAATCTTTGTCAGCGATGTACTCCCCAAAT 4792849 Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239 | | || || |||| | || |||||||| | ||| ||| ||| || || Sbjct 4792848 GCATGTCCATACGCATGAACTTCAATGTGTTTGTACAACTCGTTGTAATATTTCACTCGT 4792789 Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACG 177299 || || || ||||| |||||||||| |||||| || | ||| | ||||| || Sbjct 4792788 ACATGTTCAGGATTCCAGTTGCTGACGATCCAGCAGACCAGTTTG-TTTTTGC----TCG 4792734 Query 177300 GGATTCGATACTAATGCAGTGTCTCTG-AGCGTTAGT-GATCCATAGGGCACGTGAATAT 177357 | | | | | | || || |||| || | | || ||||| ||||| || |||| Sbjct 4792733 GTGGTACAAAGTCCTCCACAGTATCTGCTGCTACAATAGACCCATAAGGCACTTGGATAT 4792674 Query 177358 CCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAG- 177416 | || || | | ||| | | || |||||||| | ||| | || || |||| Sbjct 4792673 CAGAATCCTGACGGTAATTGAGAGTCAGATTGAACAAGTTATTAATCCC----GGGAAGC 4792618 Query 177417 -GGGCTGTTACTG----GGCGATTCTAAGTTCATCCATATCCACTTTTGAAA 177463 |||||| | || ||||| |||||||||||||| ||||| || || || Sbjct 4792617 TGGGCTG--AATGCGACGGCGACTCTAAGTTCATCCAGATCCATTTCTGGAA 4792568 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || ||| | | || | |||||| || |||||||||| || || | Sbjct 4803261 GCCAGCTCTTTGGGTGACTTAAAATCATCCACGTGGATAAAAGCGTCTCTTGGAACAAAG 4803202 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATA-AGAGA 177064 || ||||| || ||||| | ||| || || || | || || | || |||| |||| Sbjct 4803201 TTCTCGTAGTTTTCTCTGGTTGTGCCAAGAACCACTGGCACTGTGCC---CATAGAGAGG 4803145 Query 177065 TCG--GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAG 177122 | |||||||||||| || || ||||| ||||| | ||||||||||| | | ||| Sbjct 4803144 GGGACGTAGAGTTTTTCAGTGATGTAGTCTTTGTGTGCTGAGTTCTCAAAGGACAAATAA 4803085 Query 177123 AATTTACA 177130 || ||||| Sbjct 4803084 AACTTACA 4803077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578403186856000