Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq15 114 1e-20 >seq15 Length=4650977 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 569649 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 569708 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || |||||| ||| |||||| ||| | | | Sbjct 569709 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACATTC 569768 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| ||||| || || | ||||||||| Sbjct 569769 TCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACA 569828 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 569829 AAGATCTGCAT 569839 Score = 109 bits (120), Expect = 5e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| || ||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 564611 TCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAG 564670 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || |||||| ||| ||| ||| |||| ||| Sbjct 564671 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT-TTTGGCTTTGACGTT 564729 Query 35666 -GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | |||||||||| ||||| ||||| || || | || || || Sbjct 564730 CTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGAC 564789 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 564790 AAAGATCTGCAT 564801 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 564382 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 564441 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || |||||| ||| |||||| ||| | | Sbjct 564442 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACGTT 564501 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| ||||| || || || || | || || || Sbjct 564502 CTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 564561 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 564562 GAAGATCTGCAT 564573 Score = 102 bits (112), Expect = 7e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 564155 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAG 564214 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || |||||| ||| ||| || ||| | | Sbjct 564215 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTC 564274 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | |||||| |||| ||||| || || || || | || || || Sbjct 564275 TCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 564334 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 564335 AAGATCTGCAT 564345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 35555 ATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGC 35614 |||||||| || | || ||| || | || ||||||||||| || ||||| |||| || | Sbjct 569202 ATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTC 569261 Query 35615 TGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGT 35673 |||||||| | || | || |||||| ||| ||| ||| |||| ||| | | || Sbjct 569262 TGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT-TTTGGCTTTGACGTTCTCAATGGT 569320 Query 35674 GTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTG 35733 ||| || | || || |||| ||||| || || || || | || || || || ||||| Sbjct 569321 GTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGATCTG 569380 Query 35734 CAT 35736 ||| Sbjct 569381 CAT 569383 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 569421 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 569480 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || |||||| ||| ||| || ||| | | Sbjct 569481 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCCTTGACGTTC 569540 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||| |||| | ||||| ||||| || || | || || | Sbjct 569541 TCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCG 569600 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 569601 AAGATCTGCAT 569611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450771144843800