Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq32 109 5e-19 seq15 95.1 1e-14 seq146 82.4 6e-11 >seq32 Length=3524602 Score = 109 bits (120), Expect = 5e-19 Identities = 262/396 (66%), Gaps = 3/396 (1%) Strand=Plus/Minus Query 131602 GGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAA 131661 |||||| |||||||||||||| | ||||| | ||| || |||| |||||| || Sbjct 2634834 GGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAA 2634775 Query 131662 CAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCAT 131721 || ||||| | ||| || ||||| || || ||||| ||| | | ||| || | || | Sbjct 2634774 CAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGT 2634715 Query 131722 AAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | || |||| | | ||||| || | ||| ||||| ||||||| |||| || Sbjct 2634714 GTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGC 2634655 Query 131782 CATTGCGCC---TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | || || | | || ||||| || | || | ||| || |||||||||| || Sbjct 2634654 GAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAAC 2634595 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 | || ||| || |||| ||||||| ||| || ||||||| ||||||||| || | Sbjct 2634594 TCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCGT 2634535 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 | || ||| | || | || || || || || | || || || || ||||| Sbjct 2634534 CGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGCA 2634475 Query 131959 TTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTC 131994 | | || |||| ||||| ||||| | |||||| Sbjct 2634474 CTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTC 2634439 >seq15 Length=4650977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| ||||||||||| || | |||| | ||||| ||||| || ||| Sbjct 564605 GTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 564664 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||||| ||||| ||| ||| ||| Sbjct 564665 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTG 564724 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || || || || || | |||||| || || || Sbjct 564725 ACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTC 564784 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||| ||||| Sbjct 564785 TTGACAAAGATCTGCAT 564801 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || |||||||| || | |||| | ||||| ||||| || ||| Sbjct 569643 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 569702 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | ||||| ||||| ||||||| || Sbjct 569703 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 569762 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| || || || || || || | |||||| || || ||| Sbjct 569763 ACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGGGTT 569822 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 569823 TTCACAAAGATCTGCAT 569839 >seq146 Length=1599760 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131644 TTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTT 131703 ||| |||||||||||||| | || || | ||| || || | ||||| ||||| ||| | Sbjct 272183 TTCCACTCGCTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCT 272242 Query 131704 TTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | ||||||| ||||| | | || |||| | ||||| || || | ||| |||||||| Sbjct 272243 CTGCTCTTCTTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCA 272302 Query 131764 GGGTTCCAAATACAC 131778 || |||| ||||| Sbjct 272303 CGGCTCCAGGTACAC 272317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424913762131320