Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq32 96.9 4e-15 seq169 89.7 6e-13 seq22 82.4 9e-11 >seq32 Length=3524602 Score = 96.9 bits (106), Expect = 4e-15 Identities = 561/884 (63%), Gaps = 39/884 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | | || || || ||| ||||||||| ||| | Sbjct 2634262 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATCCACGGGCGAGACATTGACGCTGCC 2634321 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 2634322 ATCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 2634380 Query 104341 CAATGCTGGTAC--ACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | || || ||||||| |||||||| || ||| ||||| Sbjct 2634381 CAACGCCGGGACCAACC--GGCCGCAGCTGTCCAGCTGCTTCCTGCTCACCATGAAGGAC 2634438 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || || | | |||| |||| || || |||| ||| Sbjct 2634439 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCT 2634498 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT------AAATCTCGTATTCGG 104512 ||||| || || || | ||| || | || || || || ||| Sbjct 2634499 GGGGGGATCGGCGTG----GCGGTGAGCTG-CATCCGATCGACGGGAAGCT-ACATTGCC 2634552 Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 || || || || | || | || | | || ||||| | || | ||| ||| || Sbjct 2634553 GGCACCAACGGCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCT 2634612 Query 104573 CGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTATCTTGA 104625 ||||| | || | | ||||| | | ||| || | |||| | || || || Sbjct 2634613 CGCTACG----TCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGA 2634668 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 || |||||| || | | || ||||| ||| || ||| ||| | ||||| Sbjct 2634669 ACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGA 2634728 Query 104686 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 | | | | | || || |||| ||| | ||||| || || || |||||||||||||| Sbjct 2634729 GCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGT 2634788 Query 104746 TGAGGAGAGTGGC---AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA 104802 |||||| | | ||||| | | ||||| | || || || || ||| Sbjct 2634789 ---GGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGCGAGTGTCCCGGGCTGGACGA 2634845 Query 104803 -TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA 104861 ||| | ||| |||||||| || || ||||| | || ||| | ||||| ||| || Sbjct 2634846 GTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAGATATGAGAAGGAAGGGAGGGTGA 2634904 Query 104862 CTGCGACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920 | |||| || || | | | ||| | || || || |||| || ||||| || Sbjct 2634905 AGAGGGTGGTG-AAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACC 2634963 Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980 || || || |||||||| ||||| ||||| || ||| ||||| || || |||| || Sbjct 2634964 GGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTG 2635023 Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || ||||| | ||| ||||| ||||| | |||| | || ||| || ||| Sbjct 2635024 GGCACCATCAAATGCAGCAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAG 2635083 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 ||| || || ||||| || || ||||| ||| || ||| || Sbjct 2635084 GTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGT 2635127 >seq169 Length=1474717 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||| ||| ||| || | ||||| |||||| |||| Sbjct 1314743 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGC 1314802 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || |||| ||||||||| ||| ||| ||||||| Sbjct 1314803 CTGATGCCTGGCCTAACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 1314851 >seq22 Length=4020106 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||| || || ||| ||||| || ||||| |||||| |||| Sbjct 3875860 GTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCTATCTACTGGCTGAAGAAGAGAGGC 3875919 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 ||||||||||| || || ||||||||| || || Sbjct 3875920 CTCATGCCAGGCCTTACCTACTCCAACGAACTCAT 3875954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583231746321400