Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq32 459 3e-124 seq22 104 3e-17 seq146 98.7 1e-15 seq169 93.3 5e-14 >seq32 Length=3524602 Score = 459 bits (508), Expect = 3e-124 Identities = 989/1455 (68%), Gaps = 43/1455 (3%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| ||| || ||| |||||||||| | ||||||| ||||| | ||| Sbjct 2635665 GAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTC 2635606 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||||||||| || || || |||||||| || | ||| || || Sbjct 2635605 GTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTT 2635546 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | || || | ||||| |||| || | |||||| | || ||| Sbjct 2635545 CCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCGGTCGG 2635486 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCT--CGGACGCCGGCGACCCCTTGAAC 78738 || || |||||||||| || ||||| |||| | |||| ||||| |||| | | Sbjct 2635485 CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTACTGACG--GGCGAGCCCTCGTAT 2635428 Query 78739 GTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGG 78795 |||||||| | || ||| |||||||||||| | ||| |||||| |||||| Sbjct 2635427 GTCTCGTAGGGGCCGAGCTCTGCGGCGAGTTCGCAGCTGGCCTC---CAGGGCGGCGTGG 2635371 Query 78796 TACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT--GGTCTCGTCGAACGAAA 78853 || | | ||||||||| |||||||| || | ||| || || ||||||| | Sbjct 2635370 TAGATGGTCTCGAAGATCTGGATGTTGAGCA-GCTGGGCTTCGGGGCTT-TCGAACGGAT 2635313 Query 78854 GGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGC 78913 | | | || |||||| |||||||||| |||||||||||||| ||||||| | ||||| Sbjct 2635312 GTCGCATCAGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGC 2635253 Query 78914 GCATGTTGCTCTT-TCGGGCCGCCTCGGT---CGGGTAAAAGTTCCGATCGATGACGCGG 78969 || ||||| | | |||| | |||| |||||| | || ||||||| | Sbjct 2635252 GCTTGTTGGACGTCTCGG----CTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTG 2635197 Query 78970 TTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAAT---GA 79026 || ||||| | || ||| || || | || || ||| || ||| | Sbjct 2635196 TTGAGGTTTTTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGC 2635137 Query 79027 TTTCCTTTGATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCC 79086 | | ||| | | | ||| | || ||||||||||| |||||| ||||||| Sbjct 2635136 TCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCC 2635077 Query 79087 GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTC 79146 ||| | ||| | | |||||||| | || | ||||||||||| | |||| Sbjct 2635076 TTGCTGGTGTACTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTC 2635017 Query 79147 TTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206 | ||||||||||||| ||| || |||||||||||| |||||| ||||||||||| || Sbjct 2635016 TGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCG 2634957 Query 79207 ACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA 79266 ||| || || | | ||| ||||| | | | ||| || ||| |||| ||| Sbjct 2634956 GTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTT-CACCCT 2634898 Query 79267 CCCTGTGCGACGTACGTCCG--GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCA 79324 |||| | | | | || | ||| | || | ||| |||| || || ||| || Sbjct 2634897 CCCT-TCCTTCTCATATCTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA 2634839 Query 79325 GGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCA 79384 | || || |||||| || ||||||| | |||||||| || |||| || ||| || Sbjct 2634838 GCCCGGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCA 2634779 Query 79385 TGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444 |||| |||||||||||||||| ||| ||| ||||| | | | | |||||| | | Sbjct 2634778 TGAACAGGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTC 2634719 Query 79445 CCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGA 79504 | |||| |||||| || ||||| | | |||| ||||||||| ||||| || | Sbjct 2634718 CTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACA 2634659 Query 79505 TGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGA 79564 ||||||| | || | |||| ||||||||||| |||||| || |||||||||||| Sbjct 2634658 TGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGT 2634599 Query 79565 AAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGAT-TCGTGTA 79623 |||||| ||||| || || | |||| || | |||||| || ||| || | | | Sbjct 2634598 AAACTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTC 2634539 Query 79624 CCGCTCGCCCGAATGTTCGAGCAGTG-GATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 ||| ||| || ||| | || | | ||||| ||||| | ||||||| ||| | Sbjct 2634538 CCG-TCGATCGGATG-CAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAG 2634481 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 |||||||| ||| || || ||||||||||| ||||| |||||||||||| | || ||| Sbjct 2634480 CGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAG 2634421 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTG 79802 ||||||||| |||| ||| || ||| || |||||||||||||||||||| | ||||| Sbjct 2634420 GAAGCAGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTG 2634361 Query 79803 CGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC-GCGCGGGAGGTCGTCG- 79860 ||||| |||| | || || | ||| ||||| || | ||| | ||| ||| Sbjct 2634360 GGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCG-TCAATGTC-TCGC 2634303 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGG 79920 |||||||| || |||| || | ||||| | || ||| ||| |||| | || ||| | Sbjct 2634302 CCGTGGATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCG 2634243 Query 79921 TAGCCCTTCTGCAGG 79935 | | |||| ||||| Sbjct 2634242 TTGATCTTCAGCAGG 2634228 Score = 345 bits (382), Expect = 5e-90 Identities = 880/1326 (66%), Gaps = 31/1326 (2%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| |||| || |||||| ||||| ||||| | |||||||| ||||| Sbjct 2634324 CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAA 2634383 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 |||||| || ||| |||||| |||| ||||| ||||| | | |||||||| ||||| Sbjct 2634384 CGCCGGGACCAACCGGCCGCAGCTGTCCAGCTGCTTCCTGCTCACCATGAAGGACGACAG 2634443 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| || ||||||||||| || || ||| ||||||||| ||| ||||||| | ||||| Sbjct 2634444 CATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGGGG 2634503 Query 19345 TATCGG-GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 ||||| | | || | ||||| |||| || | || || || |||| Sbjct 2634504 GATCGGCGTGGCGGTGAGC-TGCATCCGATCGACGGGAAGCTACATTGCCGGCACCAACG 2634562 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | || |||| | ||||| ||||| | || | |||||||||||| | |||||| Sbjct 2634563 GCAACTCCAACGGATTGGTCCCGATGCTGAGAGTTTACAACAACACGGCTCGCTACGTCG 2634622 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 ||||||| ||| ||| | || | |||||||| ||||| || || |||||| | Sbjct 2634623 ACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGAACCGTGGCACTTCG 2634682 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 |||| | || ||||| || ||| |||| || | |||||| | | | | Sbjct 2634683 ACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAG 2634742 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 |||| ||| ||||||||||| |||||||| |||||| ||| || |||| || | | Sbjct 2634743 ACCTTTTCTACGCCTTGTGGATCCCGGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGG 2634802 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| | ||||||| || ||| || || || || ||| || || |||| || Sbjct 2634803 ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCCGGGCTGGACGAGTGCTGGGGAGAGGAGT 2634862 Query 19704 TCAATGAGTTGT--ACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGC 19761 || | || | | ||| || | | || | || || | |||| |||||| ||| Sbjct 2634863 TCGAGAAGCTCTACACCAGATATGAGAAG--GAAGGGAGGGTGAAGAGGGTGGTGAAGGC 2634920 Query 19762 CCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTG 19821 | | | ||||| || | || || | |||| ||| ||||| || || |||||| Sbjct 2634921 GCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCT 2634980 Query 19822 CTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTC 19881 |||||||||||| ||| ||| || ||| ||||| | ||| | ||||| | Sbjct 2634981 CTACAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAG 2635040 Query 19882 CAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCT 19941 |||||| || || || | ||||| ||| ||||||| ||||| || || || Sbjct 2635041 CAACCTCTGCACAGAGGTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCT 2635100 Query 19942 GGCGTCCCTGTGCCTGCCGACTTTCGTCAAG-----GCCTCCTCCTTCGACTTTGCCAAA 19996 ||| ||| | ||| | | ||||| | || || |||||||| || Sbjct 2635101 GGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAGCGGACT--TTCGACTTCAAGAAG 2635158 Query 19997 TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTT 20056 || | || ||| ||| || | || || || ||||||| || | Sbjct 2635159 CTGGCCTCCGTCACCAAGGTAATCGTGAAAAACCTCAACAAGATCATCGACATCAATTAC 2635218 Query 20057 TACCCG---ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGC 20113 |||||| |||| || | | | ||| || | ||||||| ||||||||| ||||||| Sbjct 2635219 TACCCGGTCCCCGAAGCCGAG---ACGTCCAACAAGCGCCACAGGCCGATCGGGATCGGC 2635275 Query 20114 GTCCAGGGCCTGGCCGACGTTTTCATGATGCT-CGGCCTCTCATTCGACGATCCCAAGGC 20172 |||||||| |||||||| | ||||| || | || | || | ||||| ||| | || Sbjct 2635276 GTCCAGGGTCTGGCCGATGCCTTCATCCTGATGCGACATC-CGTTCGAAAGCCCCGAAGC 2635334 Query 20173 GCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTG 20232 | |||||||| ||||||||| || | |||||||| ||||| || || Sbjct 2635335 CCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTG 2635394 Query 20233 CGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCG--AG 20290 |||||||||| |||| |||||| |||||||| | | |||| ||||| |||| | || Sbjct 2635395 CGAACTCGCCGCAGAGCTCGGCCCCTACGAGACATACGAGGGCTCGCC--CGTCAGTAAG 2635452 Query 20291 GGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC-----GC-C 20344 || ||||||||| |||||||||| || || || | ||| | || Sbjct 2635453 GGCATCCTCCAGTACGACATGTGGGAGAAGACGCCGACCGACCTGTGGGACTGGAAGCTG 2635512 Query 20345 CTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCG 20404 || |||| ||||| | ||||| | | ||| |||| | ||||||||||| Sbjct 2635513 CTGAAGGAGAAGATCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCC 2635572 Query 20405 ACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAAC 20464 || || || |||||||||||| |||| ||||||||| | ||||| ||||||| | |||| Sbjct 2635573 ACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAAC 2635632 Query 20465 ATCTAC 20470 |||||| Sbjct 2635633 ATCTAC 2635638 >seq22 Length=4020106 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| | ||||| ||| ||||| || ||||||||||| ||||| ||| |||||| Sbjct 3875839 CGTCTTGTGGCTTTCGCAGCAGTGGAGGGGATCTTCTTCTCAGGCTCATTCGCTGCTATC 3875898 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 | |||||| || ||| | ||||||||||| ||||| | | ||||||||| || ||| | Sbjct 3875899 TACTGGCTGAAGAAGAGAGGCCTCATGCCAGGCCTTACCTACTCCAACGAACTCATTAGC 3875958 Query 60102 CGGGACGAGG 60111 ||||||||| Sbjct 3875959 AGGGACGAGG 3875968 >seq146 Length=1599760 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 79099 TCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTC 79158 |||| ||| |||||||| | ||| |||||||||||||| | || | ||||||| || Sbjct 271736 TCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 271795 Query 79159 TTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 ||| ||| ||||||||||||||| |||||||||||| || ||||| Sbjct 271796 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTC 271842 >seq169 Length=1474717 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || |||| |||||||||||||||||||||||| Sbjct 1315629 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 1315688 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 1315689 CGGGTCGGGGAGTA 1315702 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| |||||| || || |||||||| || ||| | || Sbjct 1314742 CGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 1314801 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||| | ||| ||||||||| || || ||||||| Sbjct 1314802 CCTGATGCCTGGCCTAACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 1314851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548497476608400