Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq32 232 7e-56 seq97 95.1 1e-14 seq5 89.7 6e-13 seq169 87.8 2e-12 >seq32 Length=3524602 Score = 232 bits (256), Expect = 7e-56 Identities = 481/702 (69%), Gaps = 12/702 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| |||||||| || || || | || ||| || Sbjct 2634349 AAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTG 2634408 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | | |||||||| ||| ||||| ||||||||||| || || Sbjct 2634409 TCCAGCTGCTTCCTGCTCACCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTG 2634468 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC-CACTGCTCGAACGT 53445 ||| |||| || | ||| ||||||| | || || ||||| | | || | | | Sbjct 2634469 AAGCAGTGCGCGCTCATTTCCAAGTCCGCTGGGGGGATCGGCGTGGCGGTGAGCTG-CAT 2634527 Query 53446 CCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||| ||| ||| | | | || || || |||||| | || | ||| | || || | Sbjct 2634528 CCGATCGA-CGGGAAGCTACATTGCCGGCACCAACGGCAACTCCAACGGATTGGTCCCGA 2634586 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| | || | |||||||||||| || |||||| ||||||| || ||| | | Sbjct 2634587 TGCTGAGAGTTTACAACAACACGGCTCGCTACGTCGACCAGGGCGGCAACAAGAGACCCG 2634646 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 || | |||||||| ||||| || ||||||||| |||| | | || || || |||||| Sbjct 2634647 GGGCCTTCGCCATGTACCTGGAACCGTGGCACTTCGACGTGTTCGACTTCCTGGAGCTGA 2634706 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || ||| || ||||||| Sbjct 2634707 AGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTAC-GCCTTGTGGATC 2634765 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 |||||||| |||||| | | ||||||| || |||| |||| | ||||||| || | | Sbjct 2634766 CCGGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGC 2634825 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGT--ATCGGACG 53800 ||||| ||||| || | | ||| || || |||||||| | || | | | | || Sbjct 2634826 GAGTGTCCCGGGCTGGACGAGTG-CTGGGGAGAGGAGTTCGAGAAGCTCTACACCAGATA 2634884 Query 53801 TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATC 53860 | | || |||| | | |||| | ||| ||||||| || | ||| | || ||| Sbjct 2634885 TGAGAAG-GAAGGGAGGGT-GAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATC 2634942 Query 53861 CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAG 53920 || || |||| || || || ||||| |||||| ||||||||| | |||| | Sbjct 2634943 ATCGAGTCCCAGACCGAAACCGGGACGCCCTACATGCTCTACAAGGACGCTTGCAACAGG 2635002 Query 53921 AAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||||| ||||| | ||| |||||||| |||||| Sbjct 2635003 AAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAAC 2635044 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || ||||| || || |||||| |||||||||||||| | Sbjct 2635551 CCTGCTGCTGGCGCCCATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTC 2635610 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| ||||||| | |||||||||| ||| || || | || ||||| || Sbjct 2635611 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGAT 2635670 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAA 55671 ||||| |||||| ||||||||||| | || | | ||||||| | |||| || Sbjct 2635671 CGTCAACCCTCACCTCCTCAAGGACCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAA 2635730 Query 55672 GA 55673 || Sbjct 2635731 GA 2635732 >seq97 Length=2179591 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||||||| ||||| ||| || || ||||| || || Sbjct 1716212 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATGCGAGTACCAAACTGA 1716271 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || || ||||| ||| Sbjct 1716272 CCCAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCACA 1716331 Query 117425 ATCGT 117429 || || Sbjct 1716332 ATGGT 1716336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| |||||||| ||||| ||| || || ||||| || || Sbjct 1733883 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATGCGAGTACCAAACTGA 1733942 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||| || || ||||| ||| Sbjct 1733943 CCCAGAGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCACA 1734002 Query 117425 ATCGT 117429 || || Sbjct 1734003 ATGGT 1734007 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| |||| |||||| ||||| ||||| || | || || |||||||| Sbjct 1716212 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATGCGAGTACCAAACTGA 1716271 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| | ||||||| |||||| || ||||| || || ||||| Sbjct 1716272 CCCAGA-GGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCAC 1716330 Query 152148 AATCGT 152153 ||| || Sbjct 1716331 AATGGT 1716336 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 ||||||||||| |||| |||||| ||||| ||||| || | || || |||||||| Sbjct 1733883 GTGAAGATGTAACGGGGGCTGGCAGCATCTTTGCCTCCATTAATGCGAGTACCAAACTGA 1733942 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| | ||||||| |||||| || ||||| || || ||||| Sbjct 1733943 CCCAGA-GGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTCTGGGCTAAGTTCAC 1734001 Query 152148 AATCGT 152153 ||| || Sbjct 1734002 AATGGT 1734007 >seq5 Length=6763396 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || ||||| |||||||||||| Sbjct 2397717 GTGAAGATGTATCGAGGGCTGGCTGAGTCCTTGCCGCCGTGCAGCCTAGTTCCAAACTGT 2397776 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| || ||||| | ||||||| ||||| || ||||| || ||| || Sbjct 2397777 CCCAGA-GGCTGCAGCAGGTTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAACCGAC 2397835 Query 152148 AATCGT 152153 ||| || Sbjct 2397836 AATGGT 2397841 >seq169 Length=1474717 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 1315702 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 1315643 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 1315642 AAGTCGAACGGGTTCT 1315627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547188741803000