Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq32 201 1e-46 seq15 161 1e-34 seq292 147 2e-30 seq146 113 5e-20 seq97 87.8 2e-12 >seq32 Length=3524602 Score = 201 bits (222), Expect = 1e-46 Identities = 819/1267 (65%), Gaps = 44/1267 (3%) Strand=Plus/Minus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| | |||||||| | |||| || || ||| || | |||||||| Sbjct 2635477 CCCACATGTCGTACTGGAGGATGCCCTTACTGACG--GGCGAGCCCTCGTATGTCTCGTA 2635420 Query 80598 CGGGCCCTCCGTCTT-GGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGATAAATGC 80653 ||||| | ||| ||| || || || | ||||| |||| ||||| || ||| Sbjct 2635419 GGGGCCGAGC-TCTGCGGCGAGTTCGCAGCTGGCCTCCA---GGGCGGCGTGGTAGATGG 2635364 Query 80654 ACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGT-CGAACGACAAGCCCATC 80712 ||| |||| |||| | | || | || ||| | | |||||| | |||| Sbjct 2635363 TCTCGAAGATCTGGATGTTGAG-CAGCTGGGCTTCGGGGCTTTCGAACGGATGTCGCATC 2635305 Query 80713 ATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTC 80772 | ||||| | || ||||| ||||| |||||||| ||||||| | |||||||||||| Sbjct 2635304 AGGATGAAGGCATCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTG 2635245 Query 80773 GATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGT 80832 || |||||| || || | ||||| | || | ||||||| ||| ||||| | Sbjct 2635244 GACGTCTCGGCTTCGGGGACCGGGTAGTAATTGATGTCGATGATCTTGTTGAGGTT---T 2635188 Query 80833 GTAACAAC--CCGTG-TAACATCATGAAGTTTCTGAAAGTCGAA--TTGGTTCCC-CTTC 80886 | || | || || | || || |||| |||||||| | | || | | Sbjct 2635187 TTCACGATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTG 2635128 Query 80887 AC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA--GCATC 80942 || | ||| | ||| | ||| ||||| ||||| ||||||||||| || || Sbjct 2635127 ACGTACATGTTG--AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGG 2635070 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 |||| ||| || | || ||||| | || | || || || |||||||| | ||| Sbjct 2635069 TGTA--CTCCACCACCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 2635012 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| ||||||||||||||||||| |||||| || || ||||| ||| ||| Sbjct 2635011 GTTGCTCTTCCTGTTGCAAGCGTCCTTGTAGAGCATGTAGGGCGTCCCGGTTTCGGTCTG 2634952 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 |||| || |||||||| ||| | || ||||||| |||||| | | | ||||| Sbjct 2634951 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACCCTCCCTTC 2634892 Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | |||| ||| ||| |||||| ||||||| | || || || | | Sbjct 2634891 CTTCTCATATCTGGTGTAGAGCTTC-TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGG 2634833 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 | |||||| | || ||||||| | |||||| || | |||| || ||||||||| Sbjct 2634832 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 2634773 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 ||| |||||||| | |||| ||| ||||| | | | | |||||| | || || Sbjct 2634772 GGTCCGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 2634713 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | || ||| || ||||| | | ||| ||||| || ||||| |||| ||||| Sbjct 2634712 TCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCACGGTTCCAGGTACATGGCGA 2634653 Query 81362 TCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | ||| |||| ||| ||||||| |||||| || || || ||| | | Sbjct 2634652 AGGCCCCGGGTCTCTTG---TTGCCGCCCTGGTCGACGTAGCGAGCCGTGTTGTTGTAAA 2634596 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475 | | || ||| |||| | || | || | ||||| || || | || ||| Sbjct 2634595 CTCTCAGCATCGGGACCAATCCGTTGGAGTTGCCGTTGGTGCCGGCAATGTAGCTTCCCG 2634536 Query 81476 TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 | | || | ||| | | | ||||| || || | |||| ||||| | || | Sbjct 2634535 TCGATCGGATGCAGCTCACCGCCACGCCGATCCCCCCAGCGGACTTGGAAATGAGCGCGC 2634476 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 || | |||| ||| || || || || |||||||| || | |||||| |||| ||| | Sbjct 2634475 ACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGTGAGCAGGAAGC 2634416 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 |||| |||| ||| || | || | ||||| ||||| || || || | ||||| ||| Sbjct 2634415 AGCTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGA 2634356 Query 81656 AATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGA 81714 | | | |||| |||| ||||| || || | |||| ||| || ||||| Sbjct 2634355 ACCACTTCTCCGACAGGAGGTTGTAGGTCTCGATGGCAGCGT-CAATGTCTCGCCCGTGG 2634297 Query 81715 ATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCGCCTGCGTTCAGGTACATC 81774 || || | | || | ||| | ||||| ||| ||| |||| | | ||| || ||| Sbjct 2634296 ATCCCAACCGACACCCTCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTCCCGTTGATC 2634237 Query 81775 TTCTGCA 81781 ||| ||| Sbjct 2634236 TTCAGCA 2634230 >seq15 Length=4650977 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||||||| | | Sbjct 564573 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 564514 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| |||||||| || || || |||||| Sbjct 564513 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 564454 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 564453 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 564394 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | ||||| | ||||| Sbjct 564393 ATCCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCAGGGGTGG 564347 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || |||||||| || || || || ||||| ||| | | Sbjct 564801 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGC 564742 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || ||||| ||||| |||||||| || || || |||||| Sbjct 564741 GACACCATTGAGAACGTCAAAGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 564682 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| ||| Sbjct 564681 CAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAT 564622 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| |||||||| || || || ||| | ||||| | ||||| Sbjct 564621 ATCCAAAAAGAATCCACCCTCCACCTTGTCCTCCGTCTGAGGGGTGG 564575 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || || || || | | Sbjct 564345 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGC 564286 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| ||||| ||||| |||||||| || || || |||||| Sbjct 564285 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 564226 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||||| || ||||| | ||||| || Sbjct 564225 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 564166 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || ||||| || || || || || | ||||| | ||||| || Sbjct 564165 ATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTCTGAGGGGTGGCCA 564116 >seq292 Length=796020 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || || || ||||| ||||| || ||||| ||| | || Sbjct 171239 ATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAGCCCAGT 171298 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || |||||||| || || || |||||||| |||||| Sbjct 171299 GACACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAG 171358 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | ||||| ||||||||||| || || || |||| || ||||| | ||||| || Sbjct 171359 CAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAAC 171418 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||||| || || || || Sbjct 171419 ATCCAGAAGGAGTCCACCCTCCACCTGGT 171447 >seq146 Length=1599760 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 |||||||| || ||||| | ||| ||||| || || ||||| |||| |||||| | | Sbjct 271736 TCGACGATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 271795 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| |||||||||||| ||||||||| ||||| ||||| ||| |||| | Sbjct 271796 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCG 271855 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| ||||| Sbjct 271856 ATGATGGCGTACCAGAGCTGCTGAGCCTTCACCAC 271890 >seq97 Length=2179591 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | || ||||||||||| || || ||| ||||| | || |||| Sbjct 1716336 ACCATTGTGAACTTAGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCC- 1716278 Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||||| |||||||| || || | || ||||| |||||||| ||| |||||||||| Sbjct 1716277 TCTGGGTCAGTTTGGTACTCGCATTAATGGAGGCAAAGATGCTGCCAGCCCCCGTTACAT 1716218 Query 32244 CTTCACC 32250 ||||||| Sbjct 1716217 CTTCACC 1716211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||||| ||| | || ||||||||||| || || ||| ||||| | || |||| Sbjct 1734007 ACCATTGTGAACTTAGCCCAGAACTTTGTGGGCAGCAACAACGTGAACATCCTGCAGCC- 1733949 Query 32185 TCTGGA-CAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||||| |||||||| || || | || ||||| |||||||| ||| |||||||||| Sbjct 1733948 TCTGGGTCAGTTTGGTACTCGCATTAATGGAGGCAAAGATGCTGCCAGCCCCCGTTACAT 1733889 Query 32244 CTTCACC 32250 ||||||| Sbjct 1733888 CTTCACC 1733882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570281991413200