Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq72 127 2e-24 >seq72 Length=2559699 Score = 127 bits (140), Expect = 2e-24 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || ||||| | |||||||| ||||| ||||| ||||||| || ||||||||| |||| Sbjct 2421717 GACCTCCCCATCATGGCGCTGCCCCCCTGCCATGCCCTCTGTCAGTTCTACGTCTGCGAC 2421776 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 ||||||||||| || ||||| || || || || | |||||||| | || ||||| || Sbjct 2421777 -GGGGAGCTGTCTTGTCAGCTGTACCAGCGCTCCGCCGACATGGGTCTGGGCGTGCCTTT 2421835 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||| || || ||||| || ||||| |||||||| || || Sbjct 2421836 CAACATCGCCAGCTACGCACTTCTCACCTACATGATTGCACA 2421877 Score = 127 bits (140), Expect = 2e-24 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || ||||| || || |||||||| ||||| || | ||| Sbjct 2421877 TGTGCAATCATGTAGGTGAGAAGTGCGTAGCTGGCGATGTTGAAAGGCACGCCCAGACCC 2421818 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| | || || || || ||||| || ||||||||||| |||| ||||||||| || Sbjct 2421817 ATGTCGGCGGAGCGCTGGTACAGCTGACAAGACAGCTCCCC-GTCGCAGACGTAGAACTG 2421759 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| ||||| |||||||| | ||||| || Sbjct 2421758 ACAGAGGGCATGGCAGGGGGGCAGCGCCATGATGGGGAGGTC 2421717 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || |||||||||||||| || ||||||| || ||||| |||||||| | ||| ||| || Sbjct 2420857 GGAGTGAAGATCTGGGATGCCAACGGGTCCCGTGACTTCCTGGACAACCTGGGCTTCACA 2420916 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 |||||||||| || |||| || || || || ||||| ||||| |||||||| || Sbjct 2420917 GAGAGGGAGGAGGGGGATCTGGGACCTGTGTATGGTTTCCAATGGAGGCACTTTGGTGCA 2420976 Query 34442 GAGTA 34446 ||||| Sbjct 2420977 GAGTA 2420981 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||| ||||| || || || || |||| || ||||||||| Sbjct 2420981 TACTCTGCACCAAAGTGCCTCCATTGGAAACCATACACAGGTCCCAGATCCCCCTCCTCC 2420922 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || ||| ||| | |||||||| ||||| || ||||||| || |||||||||||| Sbjct 2420921 CTCTCTGTGAAGCCCAGGTTGTCCAGGAAGTCACGGGACCCGTTGGCATCCCAGATCTTC 2420862 Query 7019 ACCCC 7023 || || Sbjct 2420861 ACTCC 2420857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448240070929200