Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq292 104 2e-17 seq15 91.5 1e-13 >seq292 Length=796020 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||||||||| || || || ||||| || || || || ||| Sbjct 171467 ATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 171526 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || ||| ||| || |||||||| | || || || || Sbjct 171527 GATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAG 171586 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| |||||||| |||||||| | ||||| | || |||||| Sbjct 171587 CAGAGACTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAAC 171646 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 171647 ATCCAGAAGGAGTCCAC 171663 Score = 102 bits (112), Expect = 6e-17 Identities = 145/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 23606 TTAAA-ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 ||||| |||||||||||||| ||||| ||||| || || || || || || || || || Sbjct 171233 TTAAAGATGCAGATTTTCGTGAAAACTCTCACTGGGAAGACCATTACCCTGGAGGTGGAG 171292 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 ||| ||||| |||| | | || ||| ||| || |||||||| | || || Sbjct 171293 CCCAGTGACACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCT 171352 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || ||| | |||| ||||| || ||||| |||||||| | ||||| | || Sbjct 171353 GACCAGCAGAGGCTAATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACCCTGTCGGAC 171412 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| || || |||||||| Sbjct 171413 TACAACATCCAGAAGGAGTCCAC 171435 >seq15 Length=4650977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||||||||| || ||||| ||||| || || || || || Sbjct 569842 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCC 569783 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | || || || || || || | || || || Sbjct 569782 AGTGACACCATTGAGAATGTTAAGGC-CAAGATCCAGGATAAGGAGGGCATCCCCCCTGA 569724 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || |||||||| || || |||||||| | ||||| | || || Sbjct 569723 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 569664 Query 23787 CAACATACAAAAAGAGTCCACA 23808 |||||| || ||||| |||||| Sbjct 569663 CAACATCCAGAAAGAATCCACA 569642 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || ||||| || ||| Sbjct 564345 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAAGTGGAACCCAGC 564286 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||||| || || || || | || || || || Sbjct 564285 GACACCATTGAGAACGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCCCCTGACCAG 564226 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || ||||| || | ||||| | ||| |||||| Sbjct 564225 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 564166 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| || || Sbjct 564165 ATCCAGAAAGAATCTAC 564149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337993183824380