Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq15 122 2e-22 >seq15 Length=4650977 Score = 122 bits (134), Expect = 2e-22 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| |||||||||||||||| |||||| || | || || | |||||| Sbjct 564590 AGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 564649 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || ||||| || Sbjct 564650 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 564709 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || || || |||||||| || ||||| || | ||||| || Sbjct 564710 TGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGT 564768 Query 225681 CTTGCCCGT 225689 ||||| || Sbjct 564769 TTTGCCGGT 564777 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||||||||| |||| ||||| || | || || | |||||| Sbjct 569628 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 569687 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || ||||| || Sbjct 569688 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 569747 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 569748 TGGATCTTGGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTT 569807 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || | ||||| | || | ||||| || Sbjct 569808 TTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 569842 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| || |||||||| |||| ||||| |||| || || | ||||| Sbjct 564134 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 564193 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || || || || ||||| || Sbjct 564194 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 564253 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || || |||||||| || |||||| || | ||||| ||| Sbjct 564254 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAGGGTGATGGTC 564313 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 564314 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564345 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||||||||| |||| ||||| || | || || | |||||| Sbjct 569400 AGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 569459 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || | || ||||| || || || || ||||| || Sbjct 569460 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCC 569519 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || || |||||||| || ||| | || | ||||| || Sbjct 569520 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGTT 569579 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 569580 TTGCCGGT 569587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192470311965590