Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq15 134 3e-26
seq292 114 3e-20
>seq15
Length=4650977
Score = 134 bits (148), Expect = 3e-26
Identities = 167/227 (74%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | ||||||||| || || || || ||||||||||| ||||| || | | ||
Sbjct 564580 CCTCAGACGGAGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 564639
Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000
| |||||||| || ||||| ||||| ||||| |||||||||||||| | | |||
Sbjct 564640 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 564697
Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060
|| ||||| || || ||||| |||||| |||| | | |||| ||| || ||
Sbjct 564698 CCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCC 564757
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || |||||||| ||||| ||||| || |||| |||||| ||
Sbjct 564758 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 564804
Score = 131 bits (144), Expect = 4e-25
Identities = 169/230 (73%), Gaps = 10/230 (4%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | |||||| || || || || || ||||| ||||||||||| || | | ||
Sbjct 569618 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 569677
Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000
| |||||||| || ||||| ||||| ||||| |||||||||||||| | | |||
Sbjct 569678 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 569735
Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057
|| ||||| || || || || || ||| |||| | | |||| ||| ||| ||
Sbjct 569736 CCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTC---ACTGGGCTCCACC 569792
Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||| || || |||||||| ||||| || ||||| |||| |||||| ||
Sbjct 569793 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 569842
Score = 129 bits (142), Expect = 1e-24
Identities = 164/224 (73%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | |||||| || ||||| || ||||| || ||||||||||| || | | ||
Sbjct 564352 CCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 564411
Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000
| |||||||| || ||||| ||||| ||||| |||||||||||||| | | |||
Sbjct 564412 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 564469
Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060
|| ||||| || || || || ||||| |||| | | |||| ||| || ||
Sbjct 564470 CCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCC 564529
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||| ||||| ||||| ||||||| ||||||
Sbjct 564530 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564573
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | ||| ||||| || || ||||| ||||| ||||||||||| |||| | ||
Sbjct 564124 CCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 564183
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| ||||| || || || ||||| ||||| |||||||||||||| | | ||| ||
Sbjct 564184 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 564243
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||||| || || ||||| ||||| |||| | | |||| || ||||| ||
Sbjct 564244 CTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAG 564303
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| ||||| ||||| ||||||| ||||||
Sbjct 564304 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564345
Score = 123 bits (136), Expect = 6e-23
Identities = 163/224 (73%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | |||||| || || || || || ||||| ||||||||||| || | | ||
Sbjct 569390 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 569449
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || || || ||||| |||||||||||||| | | ||| ||
Sbjct 569450 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 569509
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060
||||| || || ||||| ||||| |||| | | ||| ||| ||| | | |||
Sbjct 569510 CTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCC--CCTCA 569567
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||| ||||| |||||| ||||||
Sbjct 569568 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611
Score = 102 bits (112), Expect = 2e-16
Identities = 135/186 (73%), Gaps = 6/186 (3%)
Strand=Plus/Plus
Query 151922 GATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCT 151981
||||||||| || | | || | |||||||| || || || || ||||| |||||
Sbjct 569201 GATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCT 569260
Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041
||||||||| | | ||| || ||||| || || ||||| |||||| |||| | | |
Sbjct 569261 CTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGT 569320
Query 152042 GTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGAC 152098
||| ||| ||| ||||| || || || || ||||| ||||| ||||| |||||||
Sbjct 569321 GTC---ACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGAT 569377
Query 152099 CTGCAT 152104
||||||
Sbjct 569378 CTGCAT 569383
>seq292
Length=796020
Score = 114 bits (126), Expect = 3e-20
Identities = 163/228 (71%), Gaps = 6/228 (3%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | ||| || || || || || ||||| || ||||||||||| || | | ||
Sbjct 171460 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 171401
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || ||| || || ||||| |||||||||||||| | | || ||
Sbjct 171400 GCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCC 171341
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
||| || || ||||| ||| || || |||| | | |||| ||| ||| || ||
Sbjct 171340 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTC 171284
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || || |||||||| |||||||| | |||||| ||
Sbjct 171283 CAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 171236
Score = 96.9 bits (106), Expect = 8e-15
Identities = 157/225 (70%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | ||| || || || || || ||||| || ||||||||||| || | | ||
Sbjct 171688 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 171629
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || ||| || || ||||| || ||||||||||| | | || ||
Sbjct 171628 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCC 171569
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
||| || || ||||| ||| || || |||| | | | || ||| ||| || ||
Sbjct 171568 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTC 171512
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || || ||||| || |||||||| | ||||||
Sbjct 171511 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 171467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153761888433935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |