Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq15 134 3e-26 seq292 114 3e-20 >seq15 Length=4650977 Score = 134 bits (148), Expect = 3e-26 Identities = 167/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||||||||| || || || || ||||||||||| ||||| || | | || Sbjct 564580 CCTCAGACGGAGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTCAGACAGGGT 564639 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 564640 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 564697 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || ||||| |||||| |||| | | |||| ||| || || Sbjct 564698 CCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCCACCTCC 564757 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || |||||||| ||||| ||||| || |||| |||||| || Sbjct 564758 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATGTT 564804 Score = 131 bits (144), Expect = 4e-25 Identities = 169/230 (73%), Gaps = 10/230 (4%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || || ||||| ||||||||||| || | | || Sbjct 569618 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 569677 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 569678 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 569735 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACT 152057 || ||||| || || || || || ||| |||| | | |||| ||| ||| || Sbjct 569736 CCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTC---ACTGGGCTCCACC 569792 Query 152058 TCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || |||||||| ||||| || ||||| |||| |||||| || Sbjct 569793 TCAAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTT 569842 Score = 129 bits (142), Expect = 1e-24 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || ||||| || ||||| || ||||||||||| || | | || Sbjct 564352 CCTGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 564411 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| || ||||| ||||| ||||| |||||||||||||| | | ||| Sbjct 564412 GCGGCCATCTTCCAGCTGCTTT--CCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATG 564469 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| || || || || ||||| |||| | | |||| ||| || || Sbjct 564470 CCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCC 564529 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 564530 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564573 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| ||||| || || ||||| ||||| ||||||||||| |||| | || Sbjct 564124 CCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 564183 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || ||||| ||||| |||||||||||||| | | ||| || Sbjct 564184 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 564243 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||||| || || ||||| ||||| |||| | | |||| || ||||| || Sbjct 564244 CTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACTTCCAG 564303 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 564304 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 564345 Score = 123 bits (136), Expect = 6e-23 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || || ||||| ||||||||||| || | | || Sbjct 569390 CCTGAGACGGAGGACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGT 569449 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | ||| || Sbjct 569450 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 569509 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060 ||||| || || ||||| ||||| |||| | | ||| ||| ||| | | ||| Sbjct 569510 CTCCTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCC--CCTCA 569567 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| ||||| |||||| |||||| Sbjct 569568 AGGGTGATGGTTTTGCCGGTGAGGGTCTTGCCGAAGATCTGCAT 569611 Score = 102 bits (112), Expect = 2e-16 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 151922 GATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCT 151981 ||||||||| || | | || | |||||||| || || || || ||||| ||||| Sbjct 569201 GATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCT 569260 Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||||||||| | | ||| || ||||| || || ||||| |||||| |||| | | | Sbjct 569261 CTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTGGCTTTGACGTTCTCAATGGT 569320 Query 152042 GTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGAC 152098 ||| ||| ||| ||||| || || || || ||||| ||||| ||||| ||||||| Sbjct 569321 GTC---ACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGAT 569377 Query 152099 CTGCAT 152104 |||||| Sbjct 569378 CTGCAT 569383 >seq292 Length=796020 Score = 114 bits (126), Expect = 3e-20 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || ||||||||||| || | | || Sbjct 171460 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 171401 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| |||||||||||||| | | || || Sbjct 171400 GCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGGAGGAATGCC 171341 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| || || |||| | | |||| ||| ||| || || Sbjct 171340 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTC 171284 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || || |||||||| |||||||| | |||||| || Sbjct 171283 CAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCATCTT 171236 Score = 96.9 bits (106), Expect = 8e-15 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || ||||| || ||||||||||| || | | || Sbjct 171688 CCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 171629 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || ||| || || ||||| || ||||||||||| | | || || Sbjct 171628 GCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCC 171569 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || ||||| ||| || || |||| | | | || ||| ||| || || Sbjct 171568 TTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTC 171512 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||| || |||||||| | |||||| Sbjct 171511 CAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 171467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153761888433935