Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28] 3,985 sequences; 748,923,461 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq15 140 2e-28 seq292 132 3e-26 >seq15 Length=4650977 Score = 140 bits (154), Expect = 2e-28 Identities = 159/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| ||| |||||| ||||||||||| || | || ||| | || ||| Sbjct 564365 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 564424 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||| | |||||| || | || | || ||||| ||| Sbjct 564425 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 564484 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | | |||| | ||||||||| || || ||||||| || || ||||| Sbjct 564485 ATCTT-GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTT 564543 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||| |||||||| |||||| Sbjct 564544 GCCGGTGAGGGTCTTGACGAAGATCTGCATG 564574 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | || ||||| || || || || ||||||||||| |||| Sbjct 564119 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAC 564178 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||||||||||| | |||||| || | || Sbjct 564179 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 564238 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| || || || | | |||| | ||||||||| || |||||| Sbjct 564239 ATGCCCTCCTTATCCTGGAT-TTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCAC 564297 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| || || ||||| || ||||||||||| |||||||| |||||| Sbjct 564298 TTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 564346 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | || ||||| || ||| || |||||||| ||||| || Sbjct 564571 CATGCCACCCCTCAGACGGAGGACAAGGTGGAGGGTGGATTCTTTTTGGATATTGTAGTC 564630 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||||| | |||||| || | Sbjct 564631 AGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGG 564690 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| || || |||| | |||| | ||||||||| || | Sbjct 564691 GGGGATGCCCTCCTTATCCTGGAT-TTTGGCTTTGACGTTCTCAATGGTGTCGCTGGGCT 564749 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || || || || ||||||||||| || ||||| |||||| Sbjct 564750 CCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 564802 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| || || ||||||||||| || | || ||| | || ||| Sbjct 569631 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 569690 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||| | |||||| || | || | || ||||| ||| Sbjct 569691 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 569750 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || ||| | |||||||| || |||||||| | || || || || Sbjct 569751 ATCTT-GGCCTTAACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTT 569809 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||| ||||| ||||| ||||| Sbjct 569810 GCCGGTGAGGGTTTTCACAAAGATCTGCAT 569839 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| || || ||||||||||| || | || ||| | || ||| Sbjct 569403 ACCAGGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 569462 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| | |||||| || | || | || ||||| ||| Sbjct 569463 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGG 569522 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || || | | |||| | |||||||| || ||| |||| | || || || || Sbjct 569523 AT-TTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCCCCTCAAGGGTGATGGTTTT 569581 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||||||||| ||||||| |||||| Sbjct 569582 GCCGGTGAGGGTCTTGCCGAAGATCTGCATG 569612 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 44155 GATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACG 44214 ||||||||| || | || ||| | || ||||||||||| || |||||||||| | Sbjct 569201 GATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCT 569260 Query 44215 CTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGG 44273 |||||| || | || | || ||||| ||| || || |||| | |||| | |||| Sbjct 569261 CTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATTTTG-GCTTTGACGTTCTCAATGG 569319 Query 44274 TGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTT 44333 |||| || || || |||| || || ||||| || ||||||||||| |||||||| | Sbjct 569320 TGTCACTGGGCTCAACTTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAGATCT 569379 Query 44334 GCATG 44338 ||||| Sbjct 569380 GCATG 569384 >seq292 Length=796020 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | ||||||||| || ||| |||||| ||||||||||| || Sbjct 171469 CATGCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 171410 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || |||||||| || || |||||||| | | |||||| || | Sbjct 171409 CGACAGGGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATTAGCCTCTGCTGGTCAGG 171350 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||| || ||| ||||| ||| | | |||| | |||||||| || | Sbjct 171349 AGGAATGCCTTCTTTATCCTGAATCTT-TGCCTTCACGTTCTCAATGGTGTCACTGGGCT 171291 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| ||||| ||||| || ||||| || |||||||| || ||||| Sbjct 171290 CCACCTCCAGGGTAATGGTCTTCCCAGTGAGAGTTTTCACGAAAATCTGCAT 171239 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || ||||| | | ||||||||| || ||| |||||| ||||||||||| || | Sbjct 171694 TCCTCCCCTCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 171635 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| | || |||||||| || || |||||||||| | |||||| || | ||| Sbjct 171634 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 171575 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | ||||| || ||| ||||| ||| | | |||| | ||||| || || |||| Sbjct 171574 AATGCCTTCTTTATCCTGAATCTT-TGCCTTCACGTTCTCAATGGTATCACTGGGCTCCA 171516 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| || || ||||| || |||||||| |||||||| || |||||| Sbjct 171515 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATG 171466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359972916278745