Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Poecilia_20formosa_20[refseq_20GCF_5F000485575.1_202013-10-28]
3,985 sequences; 748,923,461 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq39 178 2e-39
seq93 118 2e-21
seq283 107 3e-18
>seq39
Length=3324142
Score = 178 bits (196), Expect = 2e-39
Identities = 207/278 (74%), Gaps = 1/278 (0%)
Strand=Plus/Minus
Query 8310 CCTTGA-CGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368
|||||| ||||| | || || || ||| | | ||| | |||||||| | || ||
Sbjct 2726915 CCTTGAACGTTGTTGCAAACCAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCAAAGCCG 2726856
Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428
|| || || ||||||||||||||||||||| | || ||||| ||| ||| ||||
Sbjct 2726855 ACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCTGGCGAGCAAATGGGATTCCCCATC 2726796
Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488
||||||||||||||||| |||||||||| ||| | || |||| || || ||||||||
Sbjct 2726795 AGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACCATCGTCTCCCCAAAAATGGCGTTC 2726736
Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAA 8548
|| |||||||| ||||| | | |||| ||| ||||||||||| |||||||| |||||
Sbjct 2726735 GGCCGGGGCTTCTCCACAAGCAGGCCGGGGTAGAGCTCCACAGCGTCGACGTCACCGTAC 2726676
Query 8549 AGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586
|| | ||| ||| || || || || ||||||||
Sbjct 2726675 AGCTCTTCCAGTATGGCGGCCATTTCTTTGTCTCCTGT 2726638
Score = 129 bits (142), Expect = 8e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || |||| |||||| |||| ||||| || ||| |||||| ||| ||||| ||
Sbjct 2725321 TCACCAATAAGGATGAGCCGAGAAGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 2725262
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
||| |||| ||| || ||||||| |||||| || | ||||||||| ||||||||||||
Sbjct 2725261 ACTTCCTTCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATC 2725202
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392
||||| || || ||||| || || ||||| || || |||||
Sbjct 2725201 ATGAGGCCTGGGACCAGACCGAACGCCTCGTGGCCAACAGC 2725161
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 9905 AAGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTT 9964
|| |||||| ||| || | ||| ||||| || || ||||| ||||| || |
Sbjct 2724361 AACTCACCTACGACTCCCATAGGGGTTGGGCAGTCCGCCGGAACTGGAGGAAGGGCACGA 2724302
Query 9965 GCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAT 10024
| ||| ||||| || ||||| | |||||||||||| |||| | ||||||||||||||
Sbjct 2724301 GTGTAGTAGGATAGGTTGGAATAGGCTTCCCAGCTTTTGTATCCATAGTCCGCGTTGTAA 2724242
Query 10025 ATGGGAGGGCTGTCAATCAAATCGGATC 10052
| ||||| |||||||||| || |||||
Sbjct 2724241 GTAGGAGGACTGTCAATCATATGGGATC 2724214
>seq93
Length=2237016
Score = 118 bits (130), Expect = 2e-21
Identities = 175/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||||| |||| ||| |||||| || || | ||| | | |||| ||| |
Sbjct 504022 GGACACCACTTGGTGTTCAGACAGACCAGTTTCTTCAGAGTCGATGTTTTGATGATGTTG 504081
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| ||| || || |||||||||||||||||||||||| | || ||| |||| |||
Sbjct 504082 AAGCCCGTCTCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCTGGAGAGTTGATGGGATTC 504141
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
| | |||||||| |||||||| || || |||| ||| | |||||||| ||||| |||
Sbjct 504142 CCAAGCAGGCCTTTCAGGGAGAAAGGGGCTCCCATCTCCACCATGCTCTCTCCGAATATG 504201
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
| |||||| || | || |||| || || || | || | ||||| || || | |||
Sbjct 504202 GAGTTGGGGCGAGTTTTCTCCATCATGAGGCCAGGATAAAACTCCAGGGCGTCAATGTCA 504261
Query 8543 CCGTAAAG 8550
|| || ||
Sbjct 504262 CCATAGAG 504269
Score = 118 bits (130), Expect = 2e-21
Identities = 125/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294
|| ||||||||||||| ||||||||||| || ||||||||| ||| ||||||||
Sbjct 510719 CCAATAATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCGTCATCCCAGGTCGGATGTTCA 510778
Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354
||||| | || ||||||| |||||| ||||| |||||||| ||||||||||| ||
Sbjct 510779 CCCTTCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTG 510838
Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9399
|| || || || || || || | || || |||| || || |||
Sbjct 510839 AGGCCTGGGACAAGTCCGAACACTTCCTGTCCGATGGCGAGCCGC 510883
>seq283
Length=827976
Score = 107 bits (118), Expect = 3e-18
Identities = 136/187 (73%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410
|| ||||| |||| || || | || ||||| ||||||||||||||||| | ||||||
Sbjct 67818 TTCACGATGTCGAAGCCGACCTTGCCTCCGAATGTGCTGGGCTTCCAGTATTCTGGGGAG 67759
Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470
|| ||| ||| ||| ||||||||||||||| || ||||| |||| || | |||||
Sbjct 67758 CATATGGGGTTACCCAGGAGGCCTTTGAGGGAAAAGGGAGCGCCCATTTCCACCATGCTT 67699
Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530
|| ||||| || | || || | ||| |||| || || |||| ||| | || | |
Sbjct 67698 TCTCCGAATATAGTCCCTGGTCGAGTCTTCTCCAGCAGTAACCCGGGGTAAAATTCAAGA 67639
Query 8531 GCCTCGA 8537
|| ||||
Sbjct 67638 GCGTCGA 67632
Score = 84.2 bits (92), Expect = 3e-11
Identities = 172/256 (67%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | ||| || || || || ||||| || ||||| || ||| |||||
Sbjct 63996 TCACCGATGACGATAAGGCGGGTCGTTTGGAAGAGCTGCTCATCGTCCCAGGTCGGATGC 63937
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
||| |||||| || || || || |||||||| ||||||||||| | ||||||||||
Sbjct 63936 TCTGCTTTCAGGACGTCACAGACTCTGTTGTGCTCCCTGAGCCACAGTGTGGCGTACAAA 63877
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
| ||||| | || || || |||| ||||| | |||| | | | | |||
Sbjct 63876 CCCAAACCAGGAAGGAGCCCGAACACCTCCTGACCAATGGCCATCTGTCTCTCCGCCGGC 63817
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471
|| ||||||| ||| |||| | | |||| || || || || ||||||||
Sbjct 63816 ACCCCGGGAGGGTAGCTCATCCTGATGGGAGCGTCAACTACAGATGGAGGGTACATTTCT 63757
Query 9472 CCGTCAATCATCTGAT 9487
|| || | || |||||
Sbjct 63756 CCATCGACCAACTGAT 63741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716841090574400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |